ZFIN

ZFIN ID: ZDB-GENE-061007-1

CITATIONS (35 total)

Gene Name:	plexin A1b
Gene Symbol:	plxna1b

Cechmanek, P.B., Hehr, C.L., McFarlane, S. (2021) Retinal Pigment Epithelium and Neural Retinal Progenitors Interact Via Semaphorin 6D to Facilitate Optic Cup Morphogenesis. eNeuro. 8(3):

Dworschak, G.C., Punetha, J., Kalanithy, J.C., Mingardo, E., Erdem, H.B., Akdemir, Z.C., Karaca, E., Mitani, T., Marafi, D., Fatih, J.M., Jhangiani, S.N., Hunter, J.V., Dakal, T.C., Dhabhai, B., Dabbagh, O., Alsaif, H.S., Alkuraya, F.S., Maroofian, R., Houlden, H., Efthymiou, S., Dominik, N., Salpietro, V., Sultan, T., Haider, S., Bibi, F., Thiele, H., Hoefele, J., Riedhammer, K.M., Wagner, M., Guella, I., Demos, M., Keren, B., Buratti, J., Charles, P., Nava, C., Héron, D., Heide, S., Valkanas, E., Waddell, L.B., Jones, K.J., Oates, E.C., Cooper, S.T., MacArthur, D., Syrbe, S., Ziegler, A., Platzer, K., Okur, V., Chung, W.K., O'Shea, S.A., Alcalay, R., Fahn, S., Mark, P.R., Guerrini, R., Vetro, A., Hudson, B., Schnur, R.E., Hoganson, G.E., Burton, J.E., McEntagart, M., Lindenberg, T., Yilmaz, Ö., Odermatt, B., Pehlivan, D., Posey, J.E., Lupski, J.R., Reutter, H. (2021) Biallelic and monoallelic variants in PLXNA1 are implicated in a novel neurodevelopmental disorder with variable cerebral and eye anomalies. Genetics in medicine : official journal of the American College of Medical Genetics. 23(9):1715-1725

Garcia-Concejo, A., Larhammar, D. (2021) Protein kinase C family evolution in jawed vertebrates. Developmental Biology. 479:77-90

van der Klaauw, A.A., Croizier, S., Mendes de Oliveira, E., Stadler, L.K.J., Park, S., Kong, Y., Banton, M.C., Tandon, P., Hendricks, A.E., Keogh, J.M., Riley, S.E., Papadia, S., Henning, E., Bounds, R., Bochukova, E.G., Mistry, V., O'Rahilly, S., Simerly, R.B., INTERVAL, UK10K Consortium, Minchin, J.E.N., Barroso, I., Jones, E.Y., Bouret, S.G., Farooqi, I.S. (2019) Human Semaphorin 3 Variants Link Melanocortin Circuit Development and Energy Balance. Cell. 176(4):729-742.e18

Emerson, S.E., Light, S.E., Ebert, A.M. (2017) Neuronal expression patterns of the PlexinA family during zebrafish development. Gene expression patterns : GEP. 27:56-66

St Clair, R.M., Emerson, S.E., D'Elia, K.P., Weir, M.E., Schmoker, A.M., Ebert, A.M., Ballif, B.A. (2017) Fyn-dependent phosphorylation of PlexinA1 and PlexinA2 at conserved tyrosines is essential for zebrafish eye development. The FEBS journal. 285(1):72-86

Barton, R., Khakbaz, P., Bera, I., Klauda, J.B., Iovine, M.K., Berger, B.W. (2016) Interplay of specific trans- and juxtamembrane interfaces in Plexin A3 dimerization and signal transduction. Biochemistry. 55(35):4928-38

Cardoso, J.C., Bergqvist, C.A., Felix, R.C., Larhammar, D. (2016) Corticotropin-releasing hormone family evolution: five ancestral genes remain in some lineages. Journal of molecular endocrinology. 57(1):73-86

Jacob, L., Sawma, P., Garnier, N., Meyer, L.A., Fritz, J., Hussenet, T., Spenlé, C., Goetz, J., Vermot, J., Fernandez, A., Baumlin, N., Aci-Sèche, S., Orend, G., Roussel, G., Crémel, G., Genest, M., Hubert, P., Bagnard, D. (2016) Inhibition of PlexA1-mediated brain tumor growth and tumor-associated angiogenesis using a transmembrane domain targeting peptide. Oncotarget. 7:57851-57865

Yoo, S.K., Pascoe, H.G., Pereira, T., Kondo, S., Jacinto, A., Zhang, X., Hariharan, I.K. (2016) Plexins function in epithelial repair in both Drosophila and zebrafish. Nature communications. 7:12282

Chen, E.Y., Dobrinski, K.P., Brown, K.H., Clagg, R., Edelman, E., Ignatius, M.S., Chen, J.Y., Brockmann, J., Nielsen, G.P., Ramaswamy, S., Keller, C., Lee, C., and Langenau, D.M. (2013) Cross-species array comparative genomic hybridization identifies novel oncogenic events in zebrafish and human embryonal rhabdomyosarcoma. PLoS Genetics. 9(8):e1003727

Lagman, D., Ocampo Daza, D., Widmark, J., Abalo, X.M., Sundström, G., and Larhammar, D. (2013) The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications. BMC Evolutionary Biology. 13:238

Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735

Ton, Q.V., and Iovine, M.K. (2012) Semaphorin3d mediates Cx43-dependent phenotypes during fin regeneration. Developmental Biology. 366(2):195-203

Taniguchi, M., Masuda, T., Mikami, Y., Kimura, M., Yoshida, T., Mishina, M., and Shimizu, T. (2011) Identification and characterization of a novel zebrafish semaphorin. Neuroscience letters. 488(2):215-220

Kimura, M., Taniguchi, M., Mikami, Y., Masuda, T., Yoshida, T., Mishina, M., and Shimizu, T. (2007) Identification and characterization of zebrafish semaphorin 6D. Biochemical and Biophysical Research Communications. 363(3):762-768

Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433

Sato-Maeda, M., Tawarayama, H., Obinata, M., Kuwada, J.Y., and Shoji, W. (2006) Sema3a1 guides spinal motor axons in a cell- and stage-specific manner in zebrafish. Development (Cambridge, England). 133(5):937-947

Additional Citations (17):

ZFIN Staff (2024) Association of Ensembl transcripts with ZFIN genes. Semi-automated Curation.

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2022) Electronic Gene Ontology annotations created by ARBA machine learning models. Automated Data Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2019) Semi-automated association of ENSDARG and ENSDART identifiers with ZFIN genes and transcripts. Semi-automated Curation.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

Burgess, S., and Lin, S. (2012) Viral Insertion Mutants Overwrite Data. ZFIN Direct Data Submission.

Burgess, S., and Lin, S. (2011) Viral Insertion Mutants. ZFIN Direct Data Submission.

UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2003) Curation of orthology data. Manually curated data.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.