ZFIN ID: ZDB-GENE-030616-420

ZFIN ID: ZDB-GENE-030616-420

Mapping Details

Gene Name:	PRP39 pre-mRNA processing factor 39 homolog (yeast)
Symbol:	prpf39

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	20	58,019,360 - 58,049,656	GRCz12tu
NCBI Map Viewer	20	58,019,360 - 58,049,656	GRCz12tu
Ensembl	20	54,213,688 - 54,245,256	GRCz11
NCBI Map Viewer	20	54,215,014 - 54,245,372	GRCz11
UCSC	20	-	GRCz11
Vega	20	54,478,484 - 54,508,839	GRCv10

Mapped Clones containing prpf39
BUSM1-261O22	Chr: 20 Details
ZFOS-2171E4	Chr: 20 Details
ZFOS-1053B4	Chr: 20 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa6660	20	58,031,588	GRCz12tu	DIRECT		Sealy et al., 2025
	20	54,233,156	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	54,490,697	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	54,623,533	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa13245	20	58,022,245	GRCz12tu	DIRECT		Sealy et al., 2025
	20	54,242,499	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	54,481,354	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	54,632,876	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa23827	20	58,031,691	GRCz12tu	DIRECT		Sealy et al., 2025
	20	54,233,053	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	54,490,800	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	54,623,430	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa23828	20	58,022,565	GRCz12tu	DIRECT		Sealy et al., 2025
	20	54,242,179	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	54,481,674	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	54,632,556	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa37189	20	58,044,580	GRCz12tu	DIRECT		Sealy et al., 2025
	20	54,220,075	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	54,503,778	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	54,610,452	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa45722	20	58,022,641	GRCz12tu	DIRECT		Sealy et al., 2025
	20	54,242,103	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	20	54,481,750	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	20	54,632,480	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa6660	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	20		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sa13245	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa23827	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa23828	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa37189	20		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa45722	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	20		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	20		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
20	152.5 cM	prpf39	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available