Mapping Details

Genome Browser Chr Position Assembly ZFIN 10 31,461,679 - 31,517,378 GRCz12tu NCBI Map Viewer 10 31,461,679 - 31,517,378 GRCz12tu Ensembl 10 26,515,946 - 26,569,350 GRCz11 NCBI Map Viewer 10 26,515,946 - 26,569,350 GRCz11 UCSC 10 - GRCz11 UCSC 10 - GRCz11 Vega 10 26,554,233 - 26,607,637 GRCv10

Mapped Clones containing synj1
DKEY-5G14	Chr: 10 Details

GENETIC MAPPING PANELS: No data available

OTHER MAPPING INFORMATION

Markers Encoded by synj1
fi15a11 Chr: 10 Details
fb02f11 Chr: 10 Details

Genomic Feature a14 is an allele of synj1

Marker Type Chr Distance Publication / Person Comments z7504 SSLP 10 0.2 cM Brockerhoff, 2001   z9574 SSLP 10 0.9 cM Brockerhoff, 2001   fb02f11 EST 10 0.0 cM Van Epps et al., 2004 Van Epps et al. (2004) used recombination analysis to localize the a14 allele  ... Van Epps et al. (2004) used recombination analysis to localize the a14 allele of the nrc locus (no optokinetic response c) to LG 10 in a 0.24 cM region between EST fb79h03 and Z-marker Z7504. A subsequent chromosome walk using a BAC library from Incyte Genomics showed that the nrc locus is at most 0.04 cM from EST fb02f11. This EST was shown to be encoded by the zebrafish synj1 gene, which was then identified with the nrc locus.   fb79h03 EST 10 Van Epps et al., 2004 Van Epps et al. (2004) used recombination analysis to localize the a14 allele  ... Van Epps et al. (2004) used recombination analysis to localize the a14 allele of the nrc locus (no optokinetic response c) to LG 10 in a 0.24 cM region between EST fb79h03 and Z-marker Z7504. A subsequent chromosome walk using a BAC library from Incyte Genomics showed that the nrc locus is at most 0.04 cM from EST fb02f11. This EST was shown to be encoded by the zebrafish synj1 gene, which was then identified with the nrc locus.   z7504 SSLP 10 Van Epps et al., 2004 Van Epps et al. (2004) used recombination analysis to localize the a14 allele  ... Van Epps et al. (2004) used recombination analysis to localize the a14 allele of the nrc locus (no optokinetic response c) to LG 10 in a 0.24 cM region between EST fb79h03 and Z-marker Z7504. A subsequent chromosome walk using a BAC library from Incyte Genomics showed that the nrc locus is at most 0.04 cM from EST fb02f11. This EST was shown to be encoded by the zebrafish synj1 gene, which was then identified with the nrc locus.

Genomic Feature s564 is an allele of synj1
Chr 10 Muto et al., 2005 Muto, et al. (2005. PLoS Genet. 1(5):e66.) reports mapping s564 to LG10. Muto, et al. (2005. PLoS Genet. 1(5):e66.) reports mapping s564 to LG10.