ZFIN ID: ZDB-GENE-980526-52

ZFIN ID: ZDB-GENE-980526-52

Mapping Details

Gene Name:	paired box 3a
Symbol:	pax3a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	2	50,627,899 - 50,680,652	GRCz12tu
NCBI Map Viewer	2	50,627,899 - 50,680,652	GRCz12tu
Ensembl	2	47,379,266 - 47,431,205	GRCz11
NCBI Map Viewer	2	47,372,904 - 47,431,205	GRCz11
UCSC	2	-	GRCz11
Vega	2	47,526,762 - 47,578,701	GRCv10

Mapped Clones containing pax3a
DKEY-20F20	Chr: 2 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
ihb872	2	47,429,976 - 47,430,037	GRCz11	DIRECT	Zebrafish Nomenclature Committee
ihb873	2	47,429,989 - 47,430,031	GRCz11	DIRECT	Zebrafish Nomenclature Committee
nub129	2	50,679,549 - 50,679,562	GRCz12tu	DIRECT	Miyadai et al., 2023
sa33020	2	50,679,587	GRCz12tu	DIRECT	Sealy et al., 2025
	2	47,430,140	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	2	47,577,636	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	2	47,582,162	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa39931	2	50,628,805	GRCz12tu	DIRECT	Sealy et al., 2025
	2	47,380,208	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	2	47,527,704	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	2	47,632,094	Zv9	DIRECT	Busch-Nentwich et al., 2013
umu5	2	47,430,891 - 47,430,892	GRCz11	DIRECT	Nord et al., 2021
la011736Tg	2	47,585,150 - 47,585,160	Zv9	ZFIN_Zv9
la014990Tg	2	47,596,609 - 47,596,619	Zv9	ZFIN_Zv9
la014991Tg	2	47,616,719 - 47,616,729	Zv9	ZFIN_Zv9
ihb872	2		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ihb873	2		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la011736Tg	2		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la014990Tg	2		GRCz11	OTHER_MAPPING	ZFIN Curated Data
la014991Tg	2		GRCz11	OTHER_MAPPING	ZFIN Curated Data
umu5	2		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
2	176.7 cM	pax3	Mother of Pearl (MOP)	Postlethwait, John H.	Data
2	3933.0 cR	pax3	Goodfellow T51 (T51)	Geisler, Robert	Data
2	115.5 cM	pax3	Heat Shock (HS)	Woods, Ian G.	Data
2	80.51 cM	pax3	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
acsl3b	GENE	2		Minchin et al., 2008	Minchin, et al. (2008. Dev. Biol. 317(2):508-522.) reports mapping pax3a and ...

Chr 2

Minchin, et al. (2008. Dev. Biol. 317(2):508-522.) reports mapping pax3a and acsl3 to BAC ...

Genomic Feature ihb872 is an allele of pax3a