ZFIN ID: ZDB-GENE-011207-1

Mapping Details

Gene Name:	SRY-box transcription factor 10
Symbol:	sox10

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	1,254,474 - 1,263,548	GRCz12tu
NCBI Map Viewer	3	1,254,474 - 1,263,548	GRCz12tu
Ensembl	3	1,492,174 - 1,501,255	GRCz11
NCBI Map Viewer	3	1,492,174 - 1,501,252	GRCz11
UCSC	3	-	GRCz11
Vega	3	2,013,057 - 2,022,144	GRCv10

Mapped Clones containing sox10
DKEY-201F15	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
baz1	3	1,495,001	GRCz11	DIRECT		Carney et al., 2006
m618	3	1,495,077	GRCz11	DIRECT		Dutton et al., 2001
tw2	3	1,499,549	GRCz11	DIRECT		Dutton et al., 2001
tw11	3	1,499,549	GRCz11	DIRECT		Dutton et al., 2001
baz1	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
ci3020	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
m241	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
m618	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sox10_unspecified	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
t3	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
tw2	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
tw11	3		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	linkagesDirectMem2
utr13e1	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
zf3259Tg	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
zf3647	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
zf3648	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
zf3649	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
zf3650	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z8492	SSLP	3	0.0 cR	Dutton et al., 2001	Dutton, et al. (2001. Dev 128:4113-4125.) report mapping sox10 to LG3 at the same location as z8492 on the LN54 mapping panel.

Genomic Feature tw11 is an allele of sox10

Marker	Type	Chr	Distance	Publication / Person	Comments
z13387	SSLP	3	1.5 cM	Dutton et al., 2001	Dutton, et al. (2001. Dev 128:4113-4125.) crossed cls^tw11 heterozygous fish with wild-type WIK to produce a reference mapping cross. Genetic mapping of 274 meioses localized cls between z872 and z13387 on LG3.
z872	SSLP	3	2.4 cM	Dutton et al., 2001	Dutton, et al. (2001. Dev 128:4113-4125.) crossed cls^tw11 heterozygous fish with wild-type WIK to produce a reference mapping cross. Genetic mapping of 274 meioses localized cls between z872 and z13387 on LG3.

Genomic Feature zf3647 is an allele of sox10