ZFIN ID: ZDB-GENE-090514-3

Mapping Details

Gene Name: calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, b
Symbol: cacna1ab
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 11 32,986,623 - 33,264,105 GRCz12tu
NCBI Map Viewer 11 32,986,623 - 33,264,105 GRCz12tu
Ensembl 11 30,817,943 - 31,026,335 GRCz11
NCBI Map Viewer 11 30,749,638 - 31,033,533 GRCz11
UCSC 11 - GRCz11
Vega 11 30,570,759 - 30,779,151 GRCv10
Mapped Clones containing cacna1ab
CH211-200N13 Chr: 11 Details
CH211-74A19 Chr: 11 Details
DKEY-69N2 Chr: 11 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
p415 11 30,912,033 GRCz11 DIRECT Meserve et al., 2021
sa5845 11 33,169,024 GRCz12tu DIRECT Sealy et al., 2025
11 30,930,956 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,683,772 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,806,410 Zv9 DIRECT Busch-Nentwich et al., 2013
sa9062 11 33,188,289 GRCz12tu DIRECT Sealy et al., 2025
11 30,950,221 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,703,037 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,825,675 Zv9 DIRECT Busch-Nentwich et al., 2013
sa10764 11 33,170,627 GRCz12tu DIRECT Sealy et al., 2025
11 30,932,559 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,685,375 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,808,013 Zv9 DIRECT Busch-Nentwich et al., 2013
sa12516 11 33,144,158 GRCz12tu DIRECT Sealy et al., 2025
11 30,906,086 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,658,902 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,781,540 Zv9 DIRECT Busch-Nentwich et al., 2013
sa12560 11 33,144,158 GRCz12tu DIRECT Sealy et al., 2025
11 30,906,086 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,658,902 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,781,540 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15403 11 33,147,889 GRCz12tu DIRECT Sealy et al., 2025
11 30,909,817 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,662,633 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,785,271 Zv9 DIRECT Busch-Nentwich et al., 2013
sa27809 11 33,262,930 GRCz12tu DIRECT Sealy et al., 2025
11 31,024,670 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,777,486 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,900,124 Zv9 DIRECT Busch-Nentwich et al., 2013
sa35120 11 33,146,349 GRCz12tu DIRECT Sealy et al., 2025
11 30,908,277 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,661,093 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,783,731 Zv9 DIRECT Busch-Nentwich et al., 2013
sa35121 11 33,185,041 GRCz12tu DIRECT Sealy et al., 2025
11 30,946,973 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,699,789 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,822,427 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41872 11 33,189,091 GRCz12tu DIRECT Sealy et al., 2025
11 30,951,023 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,703,839 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,826,477 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41873 11 33,259,911 GRCz12tu DIRECT Sealy et al., 2025
11 31,021,651 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 30,774,467 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 31,897,105 Zv9 DIRECT Busch-Nentwich et al., 2013
tm154 11 30,906,742 GRCz11 DIRECT ZFIN Curated Data
umd100 11 30,959,312 - 30,959,322 GRCz11 DIRECT Zebrafish Nomenclature Committee
la017844Tg 11 31,787,108 - 31,787,118 Zv9 ZFIN_Zv9 BurgessLin
tb204a 11 GRCz11 GENERAL_LOAD load data [singleton]
la017844Tg 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
p415 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa5845 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa9062 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa10764 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa12516 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa12560 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa15403 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa27809 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa35120 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa35121 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa41872 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa41873 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tb204a 11 GRCz11 OTHER_MAPPING linkagesDirectMem2
11 GRCz11 OTHER_MAPPING linkagesDirectMem1
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
tm154 11 GRCz11 OTHER_MAPPING directMappedMarker
11 GRCz11 OTHER_MAPPING paneledMarkersDirect
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
umd100 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available

OTHER MAPPING INFORMATION
Genomic Feature tm154 is an allele of cacna1ab
Chr Location Mapped As Panel Mapped By Scoring
11 50.3 cM tm154 Boston MGH Cross (MGH) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
Genomic Feature tb204a is an allele of cacna1ab
Marker Type Chr Distance Publication / Person Comments
DKEY-31D5 BAC 11 Wen et al., 2013
CH211-74A19 BAC 11 Wen et al., 2013
Genomic Feature tb204a is an allele of cacna1ab
Chr 11 Wen et al., 2013
Genomic Feature umd100 is an allele of cacna1ab
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