ZFIN ID: ZDB-GENE-030805-5

ZFIN ID: ZDB-GENE-030805-5

Mapping Details

Gene Name:	T-box transcription factor 1
Symbol:	tbx1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	5	15,921,177 - 15,949,401	GRCz12tu
NCBI Map Viewer	5	15,921,177 - 15,949,401	GRCz12tu
Ensembl	5	15,202,495 - 15,215,483	GRCz11
NCBI Map Viewer	5	15,187,225 - 15,215,483	GRCz11
UCSC	5	-	GRCz11
Vega	5	14,686,606 - 14,715,567	GRCv10
Vega	5	14,702,278 - 14,715,266	GRCv10

Mapped Clones containing tbx1
DKEY-27E18	Chr: 5 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
ihb520	5	15,207,168 - 15,207,174	GRCz11	DIRECT		Zebrafish Nomenclature Committee
ihb521	5	15,207,170 - 15,207,174	GRCz11	DIRECT		Zebrafish Nomenclature Committee
tm208	5	15,209,458	GRCz11	DIRECT		ZFIN Curated Data
tu285	5	15,204,137	GRCz11	DIRECT		ZFIN Curated Data
ihb520	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	5		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
ihb521	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	5		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
tm208	5		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	5		GRCz11	OTHER_MAPPING	linkagesDirectMem1
	5		GRCz11	OTHER_MAPPING	linkagesDirectMem2
tu285	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	5		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	23.2 cM	tbx1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z10456	SSLP	5	5.8 cR	Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.
z7351	SSLP	5		Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.
fb38h03	EST	5	2.6 cR	Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.
tm208	Feature	5		Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.

Genomic Feature tm208 is an allele of tbx1

Marker	Type	Chr	Publication / Person	Comments
z7351	SSLP	5	Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.
z10456	SSLP	5	Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.
fb38h03	EST	5	Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.
tbx1	GENE	5	Piotrowski et al., 2003	Piotrowski et al. (2003) used radiation hybrid and meiotic mapping panels to show that tbx1 and vgo^m208 lie on LG 5 between markers z7351/fb38h03 and z10456.

Genomic Feature ihb521 is an allele of tbx1