ZFIN ID: ZDB-GENE-990715-2

Mapping Details

Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Symbol: sema3d
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 18 10,399,534 - 10,466,921 GRCz12tu
NCBI Map Viewer 18 10,399,534 - 10,466,921 GRCz12tu
Ensembl 18 9,171,778 - 9,238,675 GRCz11
NCBI Map Viewer 18 9,171,778 - 9,238,675 GRCz11
UCSC 18 - GRCz11
Vega 18 9,213,759 - 9,280,656 GRCv10
Mapped Clones containing sema3d
CH73-91H12 Chr: 18 Details
CH1073-181J18 Chr: 18 Details
CH1073-455M18 Chr: 18 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
mu268 18 9,186,447 - 9,186,460 GRCz11 DIRECT Hamm et al., 2016
sa1661 18 10,440,875 GRCz12tu DIRECT Sealy et al., 2025
18 9,212,625 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,254,606 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,677,228 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15069 18 10,457,428 GRCz12tu DIRECT Sealy et al., 2025
18 9,271,159 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,693,781 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19196 18 10,414,775 GRCz12tu DIRECT Sealy et al., 2025
18 9,186,525 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,228,506 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,651,128 Zv9 DIRECT Busch-Nentwich et al., 2013
sa28980 18 10,440,978 GRCz12tu DIRECT Sealy et al., 2025
18 9,212,728 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,254,709 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,677,331 Zv9 DIRECT Busch-Nentwich et al., 2013
sa30702 18 10,414,695 GRCz12tu DIRECT Sealy et al., 2025
18 9,186,445 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,228,426 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,651,048 Zv9 DIRECT Busch-Nentwich et al., 2013
sa36576 18 10,414,683 GRCz12tu DIRECT Sealy et al., 2025
18 9,186,433 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,228,414 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,651,036 Zv9 DIRECT Busch-Nentwich et al., 2013
sa43051 18 10,444,607 GRCz12tu DIRECT Sealy et al., 2025
18 9,216,357 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,258,338 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,680,960 Zv9 DIRECT Busch-Nentwich et al., 2013
sa44882 18 10,457,293 GRCz12tu DIRECT Sealy et al., 2025
18 9,229,043 GRCz11 DIRECT Busch-Nentwich et al., 2013
18 9,271,024 GRCz10 DIRECT Busch-Nentwich et al., 2013
18 8,693,646 Zv9 DIRECT Busch-Nentwich et al., 2013
la020551Tg 18 8,674,276 - 8,674,286 Zv9 ZFIN_Zv9 BurgessLin
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
mu268 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa1661 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa15069 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19196 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa28980 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa30702 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa36576 18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa43051 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa44882 18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
18 32.3 cM sema3d Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION: No data available
Genomic Feature mu268 is an allele of sema3d
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