ZFIN ID: ZDB-GENE-030131-9102

ZFIN ID: ZDB-GENE-030131-9102

Mapping Details

Gene Name:	collagen, type I, alpha 1a
Symbol:	col1a1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	21,968,363 - 21,984,882	GRCz12tu
NCBI Map Viewer	3	21,968,363 - 21,984,882	GRCz12tu
Ensembl	3	23,221,047 - 23,237,816	GRCz11
NCBI Map Viewer	3	23,221,174 - 23,237,693	GRCz11
UCSC	3	-	GRCz11
Vega	3	23,090,499 - 23,108,910	GRCv10

Mapped Clones containing col1a1a
DKEY-31N5	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
dc124	3	23,231,941	GRCz11	DIRECT		Fisher et al., 2003
sa1748	3	21,982,381	GRCz12tu	DIRECT		Sealy et al., 2025
	3	23,235,192	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	23,104,644	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	23,526,433	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa25246	3	21,978,742	GRCz12tu	DIRECT		Sealy et al., 2025
	3	23,231,553	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	23,101,005	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	23,522,794	Zv9	DIRECT		Busch-Nentwich et al., 2013
tt281	3	23,233,009	GRCz11	DIRECT		Asharani et al., 2012
dc124	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
dmh13	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
dmh14	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa1748	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa25246	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
tt281	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
cdc27	GENE	3	Fisher et al., 2003	Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a1 gene to LG 3 between ...
z9257	SSLP	3	Fisher et al., 2003	Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a1 gene to LG 3 between ...
z10805	SSLP	3	Fisher et al., 2003	Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a1 gene to LG 3 between ...
z1140	SSLP	3	Fisher et al., 2003	Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a1 gene to LG 3 between ...

Chr 3

Fisher et al., 2003

Fisher S et al. (Dev. Biol. 264, 64-76) mapped the col1a1 gene to LG 3 between Z1140 and Z10805 ...

Markers Encoded by col1a1a
fb02c06 Chr: 3 Details
MGC:64229 Chr: 3 Details

Genomic Feature sa25246 is an allele of col1a1a