ZFIN ID: ZDB-GENE-990415-263

ZFIN ID: ZDB-GENE-990415-263

Mapping Details

Gene Name:	thyroid hormone receptor alpha a
Symbol:	thraa

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	3	33,553,594 - 33,609,947	GRCz12tu
NCBI Map Viewer	3	33,553,594 - 33,609,947	GRCz12tu
Ensembl	3	34,688,022 - 34,753,605	GRCz11
NCBI Map Viewer	3	34,692,747 - 34,753,581	GRCz11
UCSC	3	-	GRCz11
Vega	3	34,558,514 - 34,624,097	GRCv10

Mapped Clones containing thraa
RP71-18K17	Chr: 3 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
nci101	3	34,701,317 - 34,701,320	GRCz11	DIRECT		Han et al., 2020
sa25254	3	33,570,449	GRCz12tu	DIRECT		Sealy et al., 2025
	3	34,714,063	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	34,584,555	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	34,799,359	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa31341	3	33,557,749	GRCz12tu	DIRECT		Sealy et al., 2025
	3	34,701,431	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	34,571,923	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	34,786,727	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa31342	3	33,570,593	GRCz12tu	DIRECT		Sealy et al., 2025
	3	34,714,207	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	3	34,584,699	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	3	34,799,503	Zv9	DIRECT		Busch-Nentwich et al., 2013
vp33rc1	3	34,714,247 - 34,714,253	GRCz11	DIRECT		Saunders et al., 2019
la015187Tg	3	34,836,063 - 34,836,073	Zv9	ZFIN_Zv9	BurgessLin
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
nci101	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
nci102	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa25254	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sa31341	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa31342	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
vp33rc1	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	13		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	3		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
3	84.49 cM	thra	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Markers Encoded by thraa
fb59g07 Chr: 13 Details

Genomic Feature sa31341 is an allele of thraa