ZFIN ID: ZDB-GENE-040621-2

ZFIN ID: ZDB-GENE-040621-2

Mapping Details

Gene Name:	VANGL planar cell polarity protein 1
Symbol:	vangl1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	9	34,674,291 - 34,743,763	GRCz12tu
NCBI Map Viewer	9	34,674,291 - 34,743,763	GRCz12tu
Ensembl	9	33,009,284 - 33,055,440	GRCz11
NCBI Map Viewer	9	32,988,276 - 33,057,747	GRCz11
UCSC	9	Based on NM_205750	GRCz11
Vega	9	33,198,538 - 33,244,694	GRCv10

Mapped Clones containing vangl1
CH211-39H10	Chr: 9 Details
CH211-125E6	Chr: 9 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
sa13010	9	34,728,400	GRCz12tu	DIRECT	Sealy et al., 2025
	9	33,042,384	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	33,231,638	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	34,075,692	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa15707	9	34,728,199	GRCz12tu	DIRECT	Sealy et al., 2025
	9	33,042,183	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	33,231,437	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	34,075,491	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa16745	9	34,728,625	GRCz12tu	DIRECT	Sealy et al., 2025
	9	33,042,609	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	33,231,863	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	34,075,917	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa34683	9	34,730,063	GRCz12tu	DIRECT	Sealy et al., 2025
	9	33,044,047	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	33,233,301	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	34,077,355	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa41461	9	34,738,904	GRCz12tu	DIRECT	Sealy et al., 2025
	9	33,052,888	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	33,242,142	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	34,086,196	Zv9	DIRECT	Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Publication / Person	Comments
z559	SSLP	9	Jessen et al., 2004	Jessen JR et al (Gene Exp Patterns 4, 339-344) mapped the vangl1 gene to LG 9 ...
z13213	SSLP	9	Jessen et al., 2004	Jessen JR et al (Gene Exp Patterns 4, 339-344) mapped the vangl1 gene to LG 9 ...
casq2	GENE	9	Jessen et al., 2004	Jessen JR et al (Gene Exp Patterns 4, 339-344) mapped the vangl1 gene to LG 9 ...

Chr 9

Jessen JR et al (Gene Exp Patterns 4, 339-344) mapped the vangl1 gene to LG 9 adjacent to the casq2 ...

Genomic Feature sa34683 is an allele of vangl1