ZFIN ID: ZDB-GENE-030131-274

Mapping Details

Gene Name:	PRP40 pre-mRNA processing factor 40 homolog A
Symbol:	prpf40a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	9	4,683,108 - 4,730,657	GRCz12tu
NCBI Map Viewer	9	4,683,108 - 4,730,657	GRCz12tu
Ensembl	9	4,675,193 - 4,721,993	GRCz11
NCBI Map Viewer	9	4,675,193 - 4,721,973	GRCz11
UCSC	9	-	GRCz11
Vega	9	4,708,852 - 4,755,652	GRCv10

Mapped Clones containing prpf40a
CH211-279A7	Chr: 9 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
sa1197	9	4,712,883	GRCz12tu	DIRECT	Sealy et al., 2025
	9	4,704,197	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	4,737,856	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	4,710,115	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa13254	9	4,705,503	GRCz12tu	DIRECT	Sealy et al., 2025
	9	4,697,577	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	4,731,236	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	4,703,495	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa31699	9	4,692,211	GRCz12tu	DIRECT	Sealy et al., 2025
	9	4,684,285	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	4,717,944	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	4,690,203	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa41344	9	4,700,529	GRCz12tu	DIRECT	Sealy et al., 2025
	9	4,692,603	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	9	4,726,262	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	9	4,698,521	Zv9	DIRECT	Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
18	4654.0 cR	fe47a12.x1	Goodfellow T51 (T51)	Zhou, Yi	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
sp5a	GENE	9	0.1 cM	Tallafuss et al., 2001	Tallafuss, et al. (2001. Dev 128:4021-4034.) report mapping sp5 to LG9 approximately 0.10 cM from wu:fb18h07 close to the hoxd cluster.

Markers Encoded by prpf40a
fb18h07 Chr: 9 Details

Genomic Feature sa31699 is an allele of prpf40a