ZFIN ID: ZDB-GENE-030131-274

Mapping Details

Gene Name: PRP40 pre-mRNA processing factor 40 homolog A
Symbol: prpf40a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 9 4,683,108 - 4,730,657 GRCz12tu
NCBI Map Viewer 9 4,683,108 - 4,730,657 GRCz12tu
Ensembl 9 4,675,193 - 4,721,993 GRCz11
NCBI Map Viewer 9 4,675,193 - 4,721,973 GRCz11
UCSC 9 - GRCz11
Vega 9 4,708,852 - 4,755,652 GRCv10
Mapped Clones containing prpf40a
CH211-279A7 Chr: 9 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa1197 9 4,712,883 GRCz12tu DIRECT Sealy et al., 2025
9 4,704,197 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 4,737,856 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 4,710,115 Zv9 DIRECT Busch-Nentwich et al., 2013
sa13254 9 4,705,503 GRCz12tu DIRECT Sealy et al., 2025
9 4,697,577 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 4,731,236 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 4,703,495 Zv9 DIRECT Busch-Nentwich et al., 2013
sa31699 9 4,692,211 GRCz12tu DIRECT Sealy et al., 2025
9 4,684,285 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 4,717,944 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 4,690,203 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41344 9 4,700,529 GRCz12tu DIRECT Sealy et al., 2025
9 4,692,603 GRCz11 DIRECT Busch-Nentwich et al., 2013
9 4,726,262 GRCz10 DIRECT Busch-Nentwich et al., 2013
9 4,698,521 Zv9 DIRECT Busch-Nentwich et al., 2013
sa1197 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa13254 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa31699 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa41344 9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
9 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
18 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
18 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
18 4654.0 cR fe47a12.x1 Goodfellow T51 (T51) Zhou, Yi Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
sp5a GENE 9 0.1 cM Tallafuss et al., 2001 Tallafuss, et al. (2001. Dev 128:4021-4034.) report mapping sp5 to LG9 approximately 0.10 cM from wu:fb18h07 close to the hoxd cluster.

OTHER MAPPING INFORMATION
Markers Encoded by prpf40a
fb18h07 Chr: 9 Details
Genomic Feature sa31699 is an allele of prpf40a
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