ZFIN ID: ZDB-GENE-080530-2

Mapping Details

Gene Name:	VPS39 subunit of HOPS complex
Symbol:	vps39

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	17	56,134,209 - 56,173,800	GRCz12tu
NCBI Map Viewer	17	56,134,209 - 56,173,800	GRCz12tu
Ensembl	17	50,076,501 - 50,110,236	GRCz11
NCBI Map Viewer	17	50,073,970 - 50,113,486	GRCz11
UCSC	17	-	GRCz11
Vega	17	49,997,432 - 50,031,167	GRCv10

Mapped Clones containing vps39
CH1073-372I3	Chr: 17 Details
CH73-240M14	Chr: 17 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa9171	17	56,157,384	GRCz12tu	DIRECT		Sealy et al., 2025
	17	50,097,145	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	50,018,076	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	50,627,259	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa9687	17	56,163,599	GRCz12tu	DIRECT		Sealy et al., 2025
	17	50,103,359	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	50,024,290	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	50,633,473	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa14550	17	56,144,522	GRCz12tu	DIRECT		Sealy et al., 2025
	17	50,084,285	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	50,005,216	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	50,614,399	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa18429	17	56,160,431	GRCz12tu	DIRECT		Sealy et al., 2025
	17	50,100,192	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	17	50,021,123	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	17	50,630,306	Zv9	DIRECT		Busch-Nentwich et al., 2013
t20290	17	50,084,354	GRCz11	DIRECT		Schonthaler et al., 2008
sa9171	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa9687	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa14550	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa18429	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
t20290	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	17		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z4053	SSLP	17	8.6 cM	Schonthaler et al., 2008	Schonthaler, et al. (2008. Development 135(2):387-399.) reports mapping vps39 ...
z9692	SSLP	17	1.4 cM	Schonthaler et al., 2008	Schonthaler, et al. (2008. Development 135(2):387-399.) reports mapping vps39 ...
fc27c07	EST	17		Schonthaler et al., 2008	Schonthaler, et al. (2008. Development 135(2):387-399.) reports mapping vps39 ...

OTHER MAPPING INFORMATION: No data available

Genomic Feature sa9687 is an allele of vps39