ZFIN ID: ZDB-GENE-001212-3

Mapping Details

Gene Name: ATPase Na+/K+ transporting subunit alpha 1a, tandem duplicate 3
Symbol: atp1a1a.3
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 1 2,542,168 - 2,552,588 GRCz12tu
NCBI Map Viewer 1 2,542,168 - 2,552,588 GRCz12tu
Ensembl 1 1,805,294 - 1,815,660 GRCz11
NCBI Map Viewer 1 1,805,294 - 1,815,660 GRCz11
UCSC 1 - GRCz11
Vega 1 1,657,500 - 1,667,866 GRCv10
Mapped Clones containing atp1a1a.3
DKEY-208K14 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa5932 1 2,552,116 GRCz12tu DIRECT Sealy et al., 2025
1 1,815,188 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,667,394 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,571,974 Zv9 DIRECT Busch-Nentwich et al., 2013
sa6572 1 2,547,788 GRCz12tu DIRECT Sealy et al., 2025
1 1,810,860 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,663,066 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,567,646 Zv9 DIRECT Busch-Nentwich et al., 2013
sa8642 1 2,544,480 GRCz12tu DIRECT Sealy et al., 2025
1 1,807,552 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,659,758 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,564,338 Zv9 DIRECT Busch-Nentwich et al., 2013
sa9018 1 2,549,649 GRCz12tu DIRECT Sealy et al., 2025
1 1,812,721 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,664,927 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,569,507 Zv9 DIRECT Busch-Nentwich et al., 2013
sa13779 1 2,542,449 GRCz12tu DIRECT Sealy et al., 2025
1 1,805,575 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,657,781 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,562,361 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15962 1 2,552,106 GRCz12tu DIRECT Sealy et al., 2025
1 1,815,178 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,667,384 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,571,964 Zv9 DIRECT Busch-Nentwich et al., 2013
sa16341 1 2,544,582 GRCz12tu DIRECT Sealy et al., 2025
1 1,807,654 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,659,860 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,564,440 Zv9 DIRECT Busch-Nentwich et al., 2013
sa18431 1 2,549,787 GRCz12tu DIRECT Sealy et al., 2025
1 1,812,859 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,665,065 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,569,645 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19400 1 2,543,695 GRCz12tu DIRECT Sealy et al., 2025
1 1,806,767 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,658,973 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,563,553 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19401 1 2,544,096 GRCz12tu DIRECT Sealy et al., 2025
1 1,807,168 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,659,374 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,563,954 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19402 1 2,544,467 GRCz12tu DIRECT Sealy et al., 2025
1 1,807,539 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,659,745 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,564,325 Zv9 DIRECT Busch-Nentwich et al., 2013
sa25506 1 2,543,746 GRCz12tu DIRECT Sealy et al., 2025
1 1,806,818 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,659,024 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,563,604 Zv9 DIRECT Busch-Nentwich et al., 2013
sa31188 1 2,549,983 GRCz12tu DIRECT Sealy et al., 2025
1 1,813,055 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 1,665,261 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 1,569,841 Zv9 DIRECT Busch-Nentwich et al., 2013
la021006Tg 1 1,563,731 - 1,563,741 Zv9 ZFIN_Zv9 BurgessLin
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa5932 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa6572 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa8642 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa9018 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa13779 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa15962 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa16341 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa18431 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19400 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa19401 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa19402 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa25506 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa31188 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
zko60a 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 0.0 cM atp1a1a_3 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z9382 SSLP 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.3 to  ...
z9394 SSLP 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.3 to  ...

OTHER MAPPING INFORMATION
Chr 1 Rajarao et al., 2001 Rajarao, et al. (2001. Genome Res 11:1211-1220.) report mapping atp1a1a.3 to LG01 between z9382 and  ...
Genomic Feature sa16341 is an allele of atp1a1a.3
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