ZFIN ID: ZDB-GENE-021125-1

Mapping Details

Gene Name: SNF2 related chromatin remodeling ATPase 5
Symbol: smarca5
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 1 56,151,612 - 56,180,337 GRCz12tu
NCBI Map Viewer 1 56,151,612 - 56,180,337 GRCz12tu
Ensembl 1 52,792,439 - 52,820,954 GRCz11
NCBI Map Viewer 1 52,792,439 - 52,820,954 GRCz11
UCSC 1 - GRCz11
Vega 1 52,157,701 - 52,186,216 GRCv10
Mapped Clones containing smarca5
CH73-251A15 Chr: 1 Details
DKEY-76A14 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
hi550Tg 1 52,792,537 - 52,792,538 GRCz11 DIRECT ZFIN Curated Data
sa11295 1 56,175,905 GRCz12tu DIRECT Sealy et al., 2025
1 52,816,522 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 52,181,784 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 53,312,213 Zv9 DIRECT Busch-Nentwich et al., 2013
sa14090 1 56,156,643 GRCz12tu DIRECT Sealy et al., 2025
1 52,797,470 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 52,162,732 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 53,293,161 Zv9 DIRECT Busch-Nentwich et al., 2013
sa19604 1 56,157,767 GRCz12tu DIRECT Sealy et al., 2025
1 52,798,594 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 52,163,856 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 53,294,285 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32777 1 56,173,936 GRCz12tu DIRECT Sealy et al., 2025
1 52,814,553 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 52,179,815 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 53,310,244 Zv9 DIRECT Busch-Nentwich et al., 2013
hi550Tg 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa11295 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa14090 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa19604 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa32777 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
zko1049a 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
zko1049b 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 6544.0 cR smarca5 Goodfellow T51 (T51) Zhou, Yi Data
1 90.4 cM af506218 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.

OTHER MAPPING INFORMATION
Chr 1 Golling et al., 2002 Adam Amsterdam (pers. comm.) reports that smarca5 is mapped to LG1 on the T51 mapping panel.
Markers Encoded by smarca5
fb26d12 Chr: 1 Details
Genomic Feature sa11295 is an allele of smarca5
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