ZFIN ID: ZDB-GENE-001031-1

Mapping Details

Gene Name: paired box 6b
Symbol: pax6b
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 7 15,868,355 - 15,897,287 GRCz12tu
NCBI Map Viewer 7 15,868,355 - 15,897,287 GRCz12tu
Ensembl 7 15,871,156 - 15,900,606 GRCz11
NCBI Map Viewer 7 15,871,383 - 15,897,078 GRCz11
UCSC 7 - GRCz11
Vega 7 15,619,410 - 15,648,344 GRCv10
Mapped Clones containing pax6b
DKEY-157G7 Chr: 7 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
sa86 7 15,879,960 GRCz12tu DIRECT Sealy et al., 2025
7 15,882,990 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 15,631,017 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 16,648,319 Zv9 DIRECT Busch-Nentwich et al., 2013
sa9552 7 15,879,074 GRCz12tu DIRECT Sealy et al., 2025
7 15,882,104 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 15,630,131 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 16,647,433 Zv9 DIRECT Busch-Nentwich et al., 2013
sa11497 7 15,879,074 GRCz12tu DIRECT Sealy et al., 2025
7 15,882,104 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 15,630,131 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 16,647,433 Zv9 DIRECT Busch-Nentwich et al., 2013
sa13392 7 15,886,076 GRCz12tu DIRECT Sealy et al., 2025
7 15,889,106 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 15,637,133 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 16,654,435 Zv9 DIRECT Busch-Nentwich et al., 2013
sa15822 7 15,879,836 GRCz12tu DIRECT Sealy et al., 2025
7 15,882,866 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 15,630,893 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 16,648,195 Zv9 DIRECT Busch-Nentwich et al., 2013
sa20883 7 15,887,252 GRCz12tu DIRECT Sealy et al., 2025
7 15,890,282 GRCz11 DIRECT Busch-Nentwich et al., 2013
7 15,638,309 GRCz10 DIRECT Busch-Nentwich et al., 2013
7 16,655,611 Zv9 DIRECT Busch-Nentwich et al., 2013
tq253a 7 15,889,258 GRCz11 DIRECT Kleinjan et al., 2008
la010682Tg 7 16,643,086 - 16,643,096 Zv9 ZFIN_Zv9 BurgessLin
la029282Tg 7 16,642,698 - 16,642,708 Zv9 ZFIN_Zv9 BurgessLin
tq253a 7 GRCz11 GENERAL_LOAD load data [singleton]
la010682Tg 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
la029282Tg 7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa86 7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa9552 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa11497 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa13392 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa15822 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa20883 7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
tq253a 7 GRCz11 OTHER_MAPPING linkagesDirectMem2
7 GRCz11 OTHER_MAPPING linkagesDirectMem1
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
7 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
7 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
7 53.5 cM pax6b Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
smb416Et Feature 7 Kikuta et al., 2007 Et(CLG-YFP)smb5 and Et(CLG-YFP)smb416 were mapped to intron 3 of pax6b on LG7.
smb5Et Feature 7 Kikuta et al., 2007 Et(CLG-YFP)smb5 and Et(CLG-YFP)smb416 were mapped to intron 3 of pax6b on LG7.
igf1rb GENE 7 4.71 cR Schlueter et al., 2006 Schlueter PJ et al (FASEB J., 20(8):1230-1232) mapped the igf1rb gene to LG7  ...

OTHER MAPPING INFORMATION
Chr 7 Kikuta et al., 2007 Et(CLG-YFP)smb5 and Et(CLG-YFP)smb416 were mapped to intron 3 of pax6b on LG7.
Markers Encoded by pax6b
fc09c10 Chr: 7 Details
fc33g08 Chr: 7 Details
Genomic Feature tq253a is an allele of pax6b
Marker Type Chr Distance Publication / Person Comments
z11085 SSLP 7 Kleinjan et al., 2008 Kleinjan et al. (2008. PLoS Genet. 4(2): e29) report mapping the sri mutation  ...
z20963 SSLP 7 Kleinjan et al., 2008 Kleinjan et al. (2008. PLoS Genet. 4(2): e29) report mapping the sri mutation  ...
Genomic Feature tq253a is an allele of pax6b
Chr 7 Kleinjan et al., 2008 Kleinjan et al. (2008. PLoS Genet. 4(2): e29) report mapping the sri mutation to between 29.7cM  ...
Genomic Feature la029282Tg is an allele of pax6b