Genomic Feature

umc103

ID
ZDB-ALT-240507-1
Name
umc103
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Kasher Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 23
Variants
Variant Type
Small Deletion
Variant Location
Chr 23: 539938 - 539960 (GRCz11) (1) Details
Nucleotide change
CCGAGCTGCTTAATGTGACGGAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
23 bp deleted in Exon 4 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
TTCCTAAAGATGTTTGGAGACCAAACTCCTAATTTAATAGTTATAAAGCAGTTCTGTTCCGAGAAATGGACAGAAATATTCATTTTCAAGCGGTGTTATTTTTATTATTTGCAATATATCTGCAAAAATTTACCCAACAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTATATTGATACTATTCATACTTGATTTCTCTAAAGATACTAGACTTTTTTTTTGTCTCTCAGTGGATACATCATTAAAATGATCACAATGAATACCAGAAAATATCATGATATAATTGTAGGTCCACATCACTCATCCTATGCAGAGCACCGTATGATGATGACCTGCAGTTCTCAGACTGGAAGGATGAATTAAACGTTGACCAGCAGGTTTAATGCAGAGGGCTCTCGGCTGTGAACGTACCCTATGGAGTGCTCAAATCGGTTGTGGGACGCCCCGGGGAACACCAGGTAGGTTCCT
CCGAGCTGCTTAATGTGACGGAG/- CCGCTGGAACTGAGGAGTGTCAATGAAGTGCAGCAGCAGCGGGTGCAGCTCAATGTGGCCGTGGATGGGGTCATTAAACACCTGAAATACACAAACATCACAGCTCTGACAAACAAACACACTTTCTAAAGACATGCTTTGTGTTTTTCTGGAAGATTCAGACCTTCATGGGTTCAGTGGAGATCTGGCTGAGCTTCTGCAGGCAGTGGAGGATGTGCAGCCGTGCTCCCAGAGGCCTGCAGGAGGACACACAACACTACTTATATTCAGCACATGTAAACATGTATATTTATAAACAGTTTTCCTCACTTTCCTTTTTAAAATAATCTCCGTCCACAAGAACACTCAAAACTGCCCTGTGATGCATGTTAAAGGGCACCTATTTACCACCTTTTTCAAAATGTAAGATCAGTCTTTTGTGTCTCCAGAATGCATCTGTAAAGTTTCAGCTCAAATCACCTTTCAGATTATTTATTATACCTTTCAGAATGGTGGAATTT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
samhd1umc103/umc103 (AB)Homozygous♀-/- ♂-/-2 figures with image from Withers et al., 20233 figures with image from Withers et al., 2023
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Supplemental Information
Genotyping protocol
None
Citations