Genomic Feature

sh695

ID
ZDB-ALT-240202-3
Name
sh695
Synonyms
  • pg15 (1)
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Roehl Lab
Current Source
Other Pages
Notes
Comment Citation
Homozygous mutants are viable and show normal development. Marsay et al., 2021
Genome Browser
Genome Browsers
Variants
Variant Type
Small Deletion
Variant Location
Chr 4: 4256139 - 4256146 (GRCz11) (1) Details
Nucleotide Change
AGATAAAG/-
Variant Notes
The 8bp deletion (c.42_49del) in the cd9b allele leads to a frameshift in exon  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
8 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TAGGCTGCTAATATGATTTCCCTATTTATAATTGACAACCAATGCATTTCTGAAATTATATTATGAAGGAGAAAGTCTGAATGTCCGGATATAAAAAAACTTTACCCAAAAGGTAAAAAAAAAAAAATACTACAGAAATCAATGGCCACCGCTTTCAAATGTTTCTCTTTTGTGTTCAATATAATAAAAACACTCAAACAGTTTTGAAAAAAGGAGGTAATGACATAACTTTCATTTTTTGGGCGGACTGTCCCTTTAAGGATCAAATCTCTCTCTCAGAGAGCAAAGTTTGCCAGCCTAGATACAATCACACAAACACATTAAAAACATGTAAACAAGCAACTACCAAAACAAACTTCTAAATCCTCACAACAACACAATCAAGCCTTATTTACACACTTATTTCACCATCTTTCGTTTTTAACCCACAAGCATACATTTGAGTCAGCATGTGCTCATGTACTGATTCAAAGAAACACCTACCCAGAAGATGAAGTTGA
AGATAAAG/- AGCAAGTACTTGATACACTGAAGTCCACCTCCTGCGGCCATGGCTTAAAAAGTAAGTGTAGTTTTATGAGGAGAAACCCAAAACTGAGCACCTGAGAAATGTACCTTTCCCAGCTTTTCAAACAGCGAGTGTGTGAACACAAACAAATTCCAACAAACCACACCCTCCTACCTGGCCTTTGTCAGAGAGGAAGGAGGAGGAGCCAAGGCATTTTAGCAGGTCACATGGGAAAGAGCATAGATAAGAGTCTAAATGCGGATTAGTCAAGCAGAATAATGTACAAATATCATGTATAAACAGAAGAAAGATTAAAAGATCCATACCATGCCATCAATACAAGCTGATCTGGTTTAACTTTCATATAACTGGAGGAGTCCCTAAGGAAAACTGGAAACTCCGAATACAGATATTGTGCCTTTGCTTGACATCTTTTCTCTTTCAAAGTGGAGATACGGATTAAAGAAATGGAGAAAAGAGCATGGTTAATCCTGCGGTGTCAT
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations
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