Genomic Feature
yku2
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 5: 37847652 - 37847662 (GRCz11) (1) Details
- Nucleotide change
- AAGCTTGTTTT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 11 bp deleted in Exon 4 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
TATCCTCCTAGTTAGAGCAACCAACTCATATACAAAGAATCCCCTGTTTGATCCCAGCTCAGAATGGGTTGAGTGCAGTACGACCAGAGGGTTACATTAAAGTCAAATGTGAAACATTGTTTTGGAATATTTTCATGTGTAAAAAGTGATCATGTATTTAAAAAGGGTTTCATATGAAAATGTTACAACACCACATGTTATATTTGTGTTTCATGAGATTTTCAGGATTCTTTTATTAAAAGTGCACTGAAATTTGCTCTATCATAAATATATGTGCTGAGATTGAGTTCTTGCATGCTATATGGTAGGCTTTAATAACCACTCATATGAAAAATCTTGCTGAGTCTTGCTGTGCAAATTCTTATATTTTATTCTACCATTCTTACATGAATTCCCTGAATCTTCTGCTGTTGTTTCACAAAATGTCTTTCTCTTTTGCTCTTCCTCTCTTCATTTGTTGCTGTCCTTCTCTCTTTCTCTCAGTGGTCTTGAATTGACTG
AAGCTTGTTTT/- AAGTACCCTCTGGTAGAGCAGTACTTAAAGACAAAACGGTCATCGTGGGCTTTGGCTGCAAAATATCTGCTTTGTCGGGTTTTAACCTTCCTCACTTTACTGCTGGGCTGCTTTTATCTGACCTACTACATCTTTTGGGTGTCACCCAGCGATCAGTTCTCCTGCCATCTGCGCAGAGGTGTGTGTGCATCTCATACACTTCAGCTGTTAATGTGAGCGCGTGAGGGTGTTTACTTTGATGCTTTTCTGGGTGCTTTGATGCTTTTCTGTGTTTGTGTGTCTCCAGGTATATTAGTGAACCAGAGTGAAGTGCCAGATGTTGTTCAGTGTAAGCTGGTGGCAGTGGGTGTTTTCCGTCTTCTAAGCTGCATGAATCTGGTGGTGTATTTACTGTTAGTGCCGGCTGTGGTTTATGCCGGCCTTCAGCCTGCCCGTCAGCATCAGCGTGGTCAGTTCCTACGGCCATACCATTTGCTGCCGGCTTTCGGCCACGTGCTGGA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| panx1byku2/yku2 | Homozygous | ♀+/- ♂+/- | 5 figures  from Whyte-Fagundes et al., 2022 | Fig. 4 from Whyte-Fagundes et al., 2022 | |
| panx1byku2/yku2 (TL) | Homozygous | ♀-/- ♂-/- | 4 figures from Safarian et al., 2021 | 4 figures from Safarian et al., 2021 | |
| panx1ayku1/yku1; panx1byku2/yku2 | Complex | 4 figures from Whyte-Fagundes et al., 2022 | 2 figures from Whyte-Fagundes et al., 2022 |
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Supplemental Information
- Genotyping protocol
- None
- Whyte-Fagundes, P., Taskina, D., Safarian, N., Zoidl, C., Carlen, P.L., Donaldson, L.W., Zoidl, G.R. (2022) Panx1 channels promote both anti- and pro-seizure-like activities in the zebrafish via p2rx7 receptors and ATP signaling. Communications biology. 5:472
- Safarian, N., Houshangi-Tabrizi, S., Zoidl, C., Zoidl, G.R. (2021) Panx1b Modulates the Luminance Response and Direction of Locomotion in the Zebrafish. International Journal of Molecular Sciences. 22(21):
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