Genomic Feature
zf3402
- ID
- ZDB-ALT-220307-13
- Name
- zf3402
- Synonyms
-
- cwr6 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- McDermott Lab
- Current Source
- Other Pages
-
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 5: 55240106 - 55240108 (GRCz11) (1) Details
- Nucleotide change
- GGT/TG
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 2 bp inserted / 3 bp deleted in Exon 9 (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
AACAAATGTTTGCATGACTATATAGACTATGTAGAATAATATAACAAGAAAATATCAGTTTGCAACATCAAACAGCGAAACGAGCAGTTTTTAATGTCTAAAAATGAATGGAAGTGAATGAGACCGGAAATCTCGTGCCAAAAAGATTCAAATGGCAGCGCCCGCTCGTCTGCGGAGAATAAGGTCAATATGCTGGCTTTCAAATAAGATTTTCAGTTTACTTATGGGTTTAAATTGGACTTTTTTTCGTCAGTCTCAAACTTTTGACCCTGTGTATATATGCTTATTTTCTTTGAAAACTGCTTGAAAGAATTGGAGAGTTACACAGTGTATGCCATATTTCTTAGTGTCTTAACATAAATACATGTTTATCCATAACTCTTTTTGATGCCTTCTGTTTAACAGGGTTACTGCAAGTACTCAGTACTTTTCTATGGCTACTATAATAACCAGAGAACCATTGGCTTCCTGAAGTTTCGTCTCCCTCTGTCCTACCTCAT
GGT/TG GGGCATTGGGACCTTCGGGTATAGCCTCATGGTTGTGATCAGAACGTGAGTCCCTCTTTCATTCATTGCTAGATGTTGTAGCAATGACATGAAATGTTCTTGAGAAATATGTGATTATGAATTTCTATGCCTGTAAAAAAGAGCATAATTGTTGTCCCTCAGTGACAAAAGGTTTTATAGGTAGAAAACAGTTAATTGTCTTTGATTCTATATCCGAGATAATTAAACCGATTAATTGTGTGATTGTATTAGACAGCTGATACAGAAAACATAATACATACTTGATTTTAAAGGTGAAGTGTTTAATTACTGGAAATAAGCTTAATGGTGTTTTCAACCTGCTTCTACTTCATAGTAACAACAAATAAAGTTTGAATTTTTTAATTACAAAAAGTAAAGTCAGTGAACTGGACAGATATTCACAATTTTGAACACATAAAAGTAGCTTGCTCTATGATAATAACAATCTTCCCTTCCACCCATTGAAATTAGGAGAGACT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| tmc1zf3401/zf3401; tmc2bzf3404/zf3404; tmc2azf3402/zf3402 | Complex |
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Supplemental Information
- Genotyping protocol
- None
- Zhu, S., Chen, Z., Wang, H., McDermott, B.M. (2021) Tmc Reliance Is Biased by the Hair Cell Subtype and Position Within the Ear. Frontiers in cell and developmental biology. 8:570486
- Chen, Z., Zhu, S., Kindig, K., Wang, S., Chou, S.W., Davis, R.W., Dercoli, M.R., Weaver, H., Stepanyan, R., McDermott, B.M. (2020) Tmc proteins are essential for zebrafish hearing where Tmc1 is not obligatory. Human molecular genetics. 29(12):2004-2021
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