Genomic Feature

ug105a

ID
ZDB-ALT-201202-1
Name
ug105a
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Marcos Gonzalez-Gaitán Laboratory
Current Source
European Zebrafish Resource Center (EZRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 10: 5234378 - 5234387 (GRCz11) (1) Details
Nucleotide change
CAGTGGGTGT/-
Variant Notes
ug105a results in a premature stop codon in the middle of exon 2, generating a  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
10 bp deleted in Exon 2 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation: 20 AA missing (1)
Sequences
Flanking Sequence
AGGAACTGGTTTTTCACGCGTTCCCCCCTGGTGGGTTGTGGAGTCCATTGGCCCTGTCTTCAGCTCATGTTTTGAATTGTCAAAGATATCAGAATATTTGCAATATTTCAATTCTTACAATATCTAAAGTGGTTGTTACATTTCAAGACAACACAAAACAACAGCAACAACGGCAACACACACACACACACACACACACACACACACACACACAATACTGCATTTCCCCCATAACATTCTCCAGCAGCCTATATTAAATGTTCAGCTTACCAAACGGTATGCAACAGTACAAGAAATGTAACAAATGGTTTCTTTATAACCATAACGTAATGCTGGTTTGATGGTGACCAAGCAAATGACATCACATTCAAAAACAGAGGTGGAAAATCCGACTGACGAAGCCTGCAATGACGCTTCTCCTCCACGCGATGGCGCCTCTTTATCAATCAGGAAGTCGCGCAGAGCGATCATGTGACTCAGTCAAAATGGCGTCGGGGCAA
CAGTGGGTGT/- TGGTGGAGATGGTGCAAGCTTTTTACGAGGTAACTACAAACTTTCTTCTTTTGTCTTTTTGAGGTTTTTAAGATTTGTAAATATCGACAGACTGTTCTGCGTTTGCTGAGGTAAACAGGACTGGCGTAGGTGGTTGTATTCGGCTGTATTTCACATGTAATCTTCAGTAGTCTCATAGTGTAACTCCAGGAAGTGTTAAATATGACATGAGTATCAGTCAGACAGGTGAGTTGCACACCTAATTCTACCTTTACTAGTAGCTATAGTGCTGTACCAATGGTGGTGGATTTACACAAATATAGGTTCTGCTAAAAATTGAATTATGTCATTGTATAACAAGAACACTGTTTATTTTGTTTTTATCTGTTGCCAAATTGTGTAGTAAGTTGAGGTAAAGTAGGTTTGGTATTCGCAAATTCGTTCTTTTAATGGCCCATATATTGTTTATCGCGCTAAGTTGAATATTGAGTCTGAAATAGCACGCAAGGATGACTTCAAAA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations