Genomic Feature
sid101
- ID
- ZDB-ALT-201105-10
- Name
- sid101
- Synonyms
- None
- Affected Genomic Region
-
- en.cns12sh (1)
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Duester Lab
- Current Source
- Other Pages
Notes
| Comment | Citation |
|---|---|
| Fish homozygous for this deletion have normal pectoral fins. | Cunningham et al., 2018 |
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 5: 72232535 - 72232782 (GRCz11) (1) Details
- Nucleotide change
- CCGGCGGTGTGTTGTGGCTGTCCGGCGGCATCTGACCCGCATTGTCTGCACACATCTTGATTTCATTAACATCTCTTCCTTCTACTGGCTGTCACAAAGACTCTTGTTCTGCTGGAGTGATCCACCATGACTGTCTAGTGGCCTTCTAAAGGGGATCTACTATGCAGGAACCGCTTTATAAGGGGTGGCATGGTGGCGCAGTGGGTAGCACAATCATCTTACAGCGAGAAGGTCACCCCGGCTGGGTC/-
- Variant Notes
-
This line carries a 248 bp deletion which deletes the conserved cns12sh element.
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- None
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
AGTCGGCGTAACCTAGTTAAATTTGCATATATTGCAGGATTTGAAGATCAGAATCATATCTGAACTGAACACTGAAAACTGGACTGACACTGTTTCAATCCACTAATGTGAAGCCGCTTTGACACAATCCACATTGTAAAAGCGCTACACAAATCGACAATCGCATATGCTTTATTGTTCAGCCCTAGTTAGGAGACTAAAAGAGGAAAATGAGTTTAATTGTGTGAATGAATCAGCGCAGTCAGAAGTGCACACACACACACACACACACACACACACACACACACACACACTCGCACAATTGTGTGTCACGAAAGGAATTTCGCTCAGACAAATTCCAAGCGTGGCGGCAGGATAAGGCCATGGAAAGATCTCTTTTATCTCCTCGGCACTTTTGCCTTTTGTTGATGATACACTGACCTTCCTCATCGATCTCCAGCTCTAAGCTCCTGTGCGCTCTGATAATGAGACTCCGCTGATAATGAGGAAAACTAATTGTC
CCGGCGGTGTGTTGTGGCTGTCCGGCGGCATCTGACCCGCATTGTCTGCACACATCTTGATTTCATTAACATCTCTTCCTTCTACTGGCTGTCACAAAGACTCTTGTTCTGCTGGAGTGATCCACCATGACTGTCTAGTGGCCTTCTAAAGGGGATCTACTATGCAGGAACCGCTTTATAAGGGGTGGCATGGTGGCGCAGTGGGTAGCACAATCATCTTACAGCGAGAAGGTCACCCCGGCTGGGTC/- AGGTGACATTTCTGTGTGGAGTTTGCATGTTCTCCTAGTGTTGTCATGGGTTTCCTCCATCAAAAAACATGTGGTATAGGGGAATTGGGTAAGCTAAATTGTTGGTAGTGTGTATGGATGTTTCCCAGTGATGGGTTGCAGCTGGAAGGGCATTCGCTGCATTGAAAAAATATGCTGGATAAGTTGGCGGTTCATTCCACTGTGGAAACCCCAGATTAATAAAGGAACTAAGCTGAAAATTAATGAATGAATGATCAGACTTGATGAATGAAACACTTTGCTTGACATTCCCTCTTTGAACGTGCCACGCCAACACGAGGAGAACATGCAAACTCCACAGAAACACCAAATGACCCAGCCGGGACTCAAACCAGCAACCTTCTTGCTGTGAGGTGATCGTGCTACCCACTGCACCACCGTGACGCTCTTCACGAGATGTTTTTCAACCGAAAACTTTGTTCACATGAATAGTTTTGTCTGTGTAGACGTGAGCCCACAGC - Additional Sequence
- None
Fish
Supplemental Information
- Genotyping protocol
- None