Genomic Feature

va1

ID
ZDB-ALT-200324-1
Name
va1
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Thisse's Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 8
Variants
Variant Type
Small Deletion
Variant Location
Chr 8: 31104815 - 31104821 (GRCz11) (1) Details
Nucleotide change
GCTGGTC/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
7 bp deleted in Exon 2 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTCCTCTGGGTGCTCCGGTTTCCCCCACAGTCCAAAGATATGTGGTATAGTTGAATTGGGAAGGCTAAATTGTGAGTGTGTATGGATGTTTCCCAGAGATGGGTTGCAGCTGGAAGAACATCCGCTGCGTAAAACATATGCTGGATATGTTGGCGGTTCATTCCGCTGTGGCGACCCTGAATTAATAAAGGGACTAAGCCGAAAAGAAAATGAATGAATGAATCTCTGCTTTGTTTTGAAGTTATACAATCTAATTTGATTGCAAAAACATTTTAAAAATATATCAGAAATAGGTAGCTAATTCGAATCAGTCAACTTACTAGTTCAAAAAAGTAATCTAAAAGTAAATAAATAGCGGTGCATCACTACTTCACTGCAGCATATCTGTGGTGGACGGTACACAGTGACAGGATATTAATTTACCTCTCCTCAAGCGTCCGTCCTCTGTCTGAACTGTGCTTGCGCTTCATGGGGTGTGCGGGGCGCATGCGCACTCTGTC
GCTGGTC/- ATGTGCCGAAATCTGTCTTCGCTCCTCAGATTGGGCTGTCCTGTGAAAAGATGAGCGTGTGACTTCAGTTATGATGAATGGCATCGCTTCAGGGCGCTCACACGGTCACTGCCAGTCACCAACTCGCTTGCTTGTGAAAAGGTGTGGCAAACAAGTAAACAACTAACTCTTAATCCTTGGAATTGCATCACTGCGTGTGTATCTTAATTGTGGGAAAAAACGTTGTCGGGCCACCGTTAAATGTAAACTCCGTTAAGTGGCAAAGCGAGCCCGACCGGCTCTGTCAGTATTACTGGAGAACTACCCAGCTGATTCACCGCTAACGGTAAATGTCATTCACATTTGGAAAACATACAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAACGACGACATCAGTGAAAAAAACAAATGATGATATCGCTGGCTTGTTATTCACACTGCGTTGAGGGGCAAAACAGGCTTTGTAGGTTAAAGCATGTGGTTCACAGCATGTTTACC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
vgll4lva1/va1Homozygous♀+/- ♂+/-Figure 1 with image from Fillatre et al., 2019
vgll4lva1/va1; s870TgComplexFigure 10 from Fillatre et al., 2019
1 - 2 of 2
Show
Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
Show
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.