Genomic Feature
a258
- ID
- ZDB-ALT-200124-1
- Name
- a258
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Schier Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 1: 31725425 - 31725941 (GRCz11) (1) Details
- Nucleotide change
- GAGGGGGAGAGGAGACGGTCATCATCGGGCTGCGGCTGGAGGACACGGACGACATTTCCTTCATGGACAGGGGCTTTTTGCGGGTCAGCGAGAGGTCTCGGGTGAGATTGAGGGTGTACGGGCAAAACATCAACAACGAGACTTGGTCCAAAATCGCATTTACGGAGCACGAGAGGAGCCGAGTGATCGGCAACATCGACAGCTCTTCGGGGGACAACCAGAGTCAGGAGGACACGTCGGGCTTGCACCCCTGCGGCATCAGAACTTCGGATATTCTGATCTTGCCCAACATCGTTTTAAACCGCAAGACGTCTGGCACCGTGGAGATAGAGGTCAAACCTCTGCGAAAGACTGAGCGGAGCAAAGCGTACTACCTGTGCATCGCCACCTCCACACCTGCTGTGGCCGGAGCGCACGACCCGTGGACCGAGAACACGTGGATCTATCACGATGGAGAGGACACCAAAGTGATCGTGGTGGAGGAGAAAAAGTTCCTGCTGCCCTTCTGGCTCCAGGT/CATCTTCAGGACCTGGAG
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 18 bp inserted / 517 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
GGGTCTTGAGACAATTAAAAGATGCTGTCACTGAAGATCCTTGTCAAAACACCAAAAGCAGTCACGAGGAAACTTCTATATGCGCTCATTTGCATTAAGTGCAACTGTTTACGGAGCCGATTGGCTGCTACAGCGGCAAAGTTCCCGCCTCCAGTCCAGCGGCGCCACTGTATTGGCTGCCCCGTTCGCCTGTCACCGGGACATCAGTAGAGGCACGAGTTCGCGCTGCACTCGCTGAAAGTGCGATCAGTTTCAGCCGCGTAGTGGAACTCAGCGAGACCTGATGCACAAGTCAAGGCGACGCGCAGCAGAGATGAAGCCGGATTGGCTCTGATTTTTAAAAGCCCTTTCATTCAAGAGGCTGTCCATTATCAACATGGCAGAACCGTCGGTTCCAGTACCCCCTCGAAAAATGGCGTCACTCAGCCGGGTCCGAGCCTTTACTCTGATTTTCTTAACTGCAAGCAGTTGTTTAATTACTCCCACAAGTGGCAAGGAAG
GAGGGGGAGAGGAGACGGTCATCATCGGGCTGCGGCTGGAGGACACGGACGACATTTCCTTCATGGACAGGGGCTTTTTGCGGGTCAGCGAGAGGTCTCGGGTGAGATTGAGGGTGTACGGGCAAAACATCAACAACGAGACTTGGTCCAAAATCGCATTTACGGAGCACGAGAGGAGCCGAGTGATCGGCAACATCGACAGCTCTTCGGGGGACAACCAGAGTCAGGAGGACACGTCGGGCTTGCACCCCTGCGGCATCAGAACTTCGGATATTCTGATCTTGCCCAACATCGTTTTAAACCGCAAGACGTCTGGCACCGTGGAGATAGAGGTCAAACCTCTGCGAAAGACTGAGCGGAGCAAAGCGTACTACCTGTGCATCGCCACCTCCACACCTGCTGTGGCCGGAGCGCACGACCCGTGGACCGAGAACACGTGGATCTATCACGATGGAGAGGACACCAAAGTGATCGTGGTGGAGGAGAAAAAGTTCCTGCTGCCCTTCTGGCTCCAGGT/CATCTTCAGGACCTGGAG CATCTTCATTTCTATGCTGCTCTGCCTCTCGGGCATGTTCAGCGGCTTGAACTTGGGGCTGATGGCGCTGGACCCCATGG ... - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
cnnm2ba258/a258 | Homozygous | ♀+/- ♂+/- | 2 figures from Thyme et al., 2019 |
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Supplemental Information
- Genotyping protocol
- None
- LaCoursiere, C.M., Ullmann, J.F.P., Koh, H.Y., Turner, L., Baker, C.M., Robens, B., Shao, W., Rotenberg, A., McGraw, C.M., Poduri, A.H. (2024) Zebrafish models of candidate human epilepsy-associated genes provide evidence of hyperexcitability. iScience. 27:110172110172
- Thyme, S.B., Pieper, L.M., Li, E.H., Pandey, S., Wang, Y., Morris, N.S., Sha, C., Choi, J.W., Herrera, K.J., Soucy, E.R., Zimmerman, S., Randlett, O., Greenwood, J., McCarroll, S.A., Schier, A.F. (2019) Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Cell. 177(2):478-491.e20
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