Genomic Feature
szu1
- ID
- ZDB-ALT-190321-9
- Name
- szu1
- Synonyms
-
- zf2065 (1)
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Tokumoto Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 19: 3161218 - 3161232 (GRCz11) (1) Details
- Nucleotide change
- AGTGGTGTCAGACGA/C
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 1 bp inserted / 15 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
CTTCCAAAATGCTGTCGTCACTTAAATGAGCAGCCGAAAATACATCAAACATTGCCAGCGTGACCACACACTCTTCATATTATTCATAAATGAACAGCCTTTCCTTCCTGAACAATGCGTCTCATGAATTCATGCTGGGATTTGATGGAGTGTGACGACTTTTCACAATCCTGAGCTGTTCAGCTTTATCTGCTGCTGTAACTCCTGTAATCTTTTCCTGTTGACTGAGTGTCTCCTGCTCGGCAATCTAACACTGATTCTCTGAGCTCATTGATGCCGAACACACAGCGGTTAAACATTAATCCGTGTGTAATGTGTTATCACTCTCGTTCATTCATTCATTGGTGTGTTATCATCATTGTGGTGATATCAGTGCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCTTGTGAAATTCTTCAGCTCGTGTATCAGGTCTTTGTGAATGTTAGACTGAATGAGTGGTGATAGCAGACACTGACCTGGTTTTTC
AGTGGTGTCAGACGA/C GTCACCGGGAGCTAAAAGCACAGAGGGTCACGTGTGTTTATTACTATCGTCTGTTCTCTTCACGTCTGCTCGTTGTGTGTGTTCCAGTTTGGGATTTTGAGTTCATTTGTCATGCTTACCTTCATTTTTCTCTGCGGAGTCTTTGCCGTCTGTAGTTACTATTAAAAGAAGATTTCCAGAGTTACTTCCACTTGTACGTCTGCCCGTCTACCTGTCTATTCATCTGTTCTGTCTGTCTTTCTATCCTCCTGTCTGTCTGTCTTTTTATATATCCGTCTGTTTGTCTTTCTGTTTGTATGTCTGTCTGTCTGTCTATCCATCCAGCCAGCCATCCGTCTGTCCGTCCGTCTGTCTGCTATCTATCTGCCTGTCTATCTGTCTTTCTGTCTGCCTGTTCATCTGTCTCTTTTTCTTTCTGTACATCTCTCTGTCTGTCTATCCATTTGTCTGTCAGTCTACATGCCTGTCTGTCTATCTTGGTGTCTATCTATTCATCTGTC - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| stmszu1/szu1 | Homozygous | ♀-/- ♂-/- | Fig. 6  from Klangnurak et al., 2018 | ||
| stmszu1/+ | Heterozygous | ♀-/- ♂+/+ | Fig. 6 from Klangnurak et al., 2018 | ||
| stmszu1/+ | Heterozygous | ♀+/+ ♂-/- | Fig. 6 from Klangnurak et al., 2018 | ||
| stmszu1/szu1; mpv17a9/a9 | Complex | 8 figures from Pachoensuk et al., 2021 | 2 figures from Pachoensuk et al., 2021 |
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Supplemental Information
- Genotyping protocol
- None
- Pachoensuk, T., Fukuyo, T., Rezanujjaman, Md., Wanlada, K., Yamamoto, C., Maeno, A., Mostafizur Rahaman, Md., Hasan Ali, Md., Tokumoto, T. (2021) Zebrafish stm is involved in the development of otoliths and of the fertilization envelope. Reproduction & Fertility. 2(1):7-16
- Klangnurak, W., Fukuyo, T., Rezanujjaman, M.D., Seki, M., Sugano, S., Suzuki, Y., Tokumoto, T. (2018) Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish. PLoS One. 13:e0196544
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