Genomic Feature

dgi4

ID
ZDB-ALT-190220-2
Name
dgi4
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
Lab of Origin
Transplantation Immunology
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 13
Variants
Variant Type
Small Deletion
Variant Location
Chr 13: 1197129 - 1197148 (GRCz11) (1) Details
Nucleotide change
GACACAGATCTGGTGCTGAG/-
Variant Notes
None
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
20 bp deleted in Exon 2 (1)
Transcript Consequence
Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TATAATAATATAAATAATAATAATGATGATAATAATATTAATACCAATAATAATAATGATGATAATAATATTAATACCAATAATATTAATGATGATGATAATAATAATAATAATAATAATAATAATAATGATAATAATAATAATGATGGTAATGTAATAATATAAATAATAATAATGATGAGAATAATATTAATAATAATAATGATAATGATAAGGATAATAATATTATTATTAATAATAATAATAATGATAATAATAATAATATTATTAATAATAATGATGATAATAATATTAATATGAAAATATTAATAATGATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATAATAATCCTAGCCTTGTGAAAGATGGTTTTAGATGATCCAGCTTTTCCATTTGCTGATGTGTGTTTCTTGTGTGTGTGTTTTTCAGGAGATGGGAATTGCCTGCTTCACGCAGCGTCTCAGTATCTGCTGGGGGTTCAG
GACACAGATCTGGTGCTGAG/- GAAAGCTCTGCATGCGGTGCTGAAGGAAACGGACACGACTGATTTCCTGACGCGCTTTCAGACAGAGTTGTTGCACTCTCAGGAGTTCACACAGACCGGCCTGCGCTACAGCACGCTGGTGAGCGCTGGAAACCCCTGACACAATTTGTGAATCTGTTGTAGGCCTGCACCATGTTGGAAGAATCTGGCACTGTGATATTTGGTTTTTCTGTGATATATATATGGTGGCTCAGTGGTTAGGACTGTGGTCTCACAGTAAGAAGGTCCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCAGTGTTGGCGTGGGTTTCCTCCGGGTGCTCAAGTTTCCCCCACATCAAACACATGCGCTATAGGGGAATTAATGAACTCCATTGGCTGTAGTGTATGAATGTGTGTGTGAATGTGAGTGTGAGTGGGTGTTTCCCATTACTGGGTTGCAGCTGGAAGGCCATCCGCTGCATAAAACATATGCCAGAATAGTTGGCGG
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
tnfaip3dgi4/dgi4Homozygous♀+/- ♂+/-Figure 1 with image from Cultrone et al., 2020
tnfaip3dgi4/dgi4; gi5TgComplexFigure 2 with image from Cultrone et al., 2020
tnfaip3dgi4/dgi4; gi5Tg; vcc7TgComplex
tnfaip3dgi4/dgi4; gz15TgComplex
tnfaip3dgi4/dgi4; gz15Tg; m1018TgComplexFigure 1 with image from Cultrone et al., 2020
tnfaip3dgi4/dgi4; vcc4TgComplexFigure 3 with image from Cultrone et al., 2020
tnfaip3dgi4/dgi4; vcc7TgComplexFigure 3 with image from Cultrone et al., 2020
tnfaip3dgi4/+; gi5TgComplexFigure 2 with image from Cultrone et al., 2020
tnfaip3dgi4/+; gi5Tg; vcc7TgComplex
tnfaip3dgi4/+; vcc7TgComplexFigure 3 with image from Cultrone et al., 2020
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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