Genomic Feature

au60

ID
ZDB-ALT-180207-2
Name
au60
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Gross Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 5
Variants
Variant Type
Delins
Variant Location
Chr 5: 14316746 - 14316768 (GRCz11) (1) Details
Nucleotide change
GACTTCTCTGTACAGTTTATCTC/G
Variant Notes
22bp deletion mutation predicted to cause a frameshift beginning at aa 1,212,  ...
c.4,860_4,881delGAGATAAACTGTACAGAGAAGT,
p.Gly1,212Alafs*92 ;
protein truncation  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
1 bp inserted / 23 bp deleted in Exon 6 (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
CGAAAGTAAAGGAAACACAACATATCCTACTTTGAAGTAGATGATCTTTAGCAGCAGAAGACCACACAGTGTGCCATTCCTATCAGTAACATCCCGTGATGGCTATTTCCAGCAGAATTGATTGAATTACATCTTTTGAATGTGGATTCTTGAATATGACACTGAGTTCATCAAACTCACATGGCCTCGCTGGTACCAGATCTCAATCCAACAGAGCACTTTTGCAGTGTGTTGAAACATGATATTTGTATCAGGAATGTGCAAACATCTCATTTGCATGCGTTATGGTCAGCACTGACGTAAATTTCTGAAGAATATTTTCAGTACCTTGTTGAATCTAAGCCATGAAGATTAAGTTCCTCAAAGTTGTTGGCGTGTGTCATTTCATGCTTTTTATTATTTAACCTTCAAGGACACATATCTATTGTGTTCAAAACTTACTCTTCATTGAGTCCACAGCGACGGCTGGTGGGATTGCCATATTTGGTGATGGTTTCTGT
GACTTCTCTGTACAGTTTATCTC/G CCAGAGCACGGGGCACACCTTCCCAGGCCAGGATGACAACAACGATGACAGTGTTGGCACAGTGGTGCCCAGGCCGTTGCTTCACAACGCACAACACTTTCTCCTTTTCACTGCTGCGACGTAACACCTATGAAGAGAACATTACAGTCTATAATGACAAAGGTATATGAGTGATCTTAAGGGTGCAGTATGCAAGTTTGACACTAAGTGGTTGATCTAGGCATTGCACCCCTGGATCAAAACAAATGCAAGTGCAGGTTGCCAGATTGAGGACGAGCAAGTAATTTAAACAGTGTTCTAAATAAAAGCAACAGCACTTGATAGAATAAATATTTTTCATATTAAAAGTTTTTGTAACTAACACCTCGAATTTATAGAAACGGCTTCTATCTCTCACAGGTGAACAACAGAAAACTTACAATGATCACCTCAGGTACACCTCATGTGCTTTATGTAGTGTTAAATGCTAATAATGAGAGTTAAATGCTAATAATGCGAGC
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
tet3au60/+ (AB)HeterozygousUnknown
tet2au59/au59; tet3au60/au60Complex4 figures with image from Seritrakul et al., 20174 figures with image from Seritrakul et al., 2017
tet2au59/au59; tet3au60/au60; zc7TgComplex2 figures with image from Seritrakul et al., 20172 figures with image from Seritrakul et al., 2017
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Supplemental Information
Genotyping protocol
None
Citations