Genomic Feature
ba6
- ID
- ZDB-ALT-171108-1
- Name
- ba6
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Bath Zebrafish Development Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 4: 6044404 - 6044409 (GRCz11) (1) Details
- Nucleotide change
- GGCCTC/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 6 bp deleted at position 6035834 in RefSeq:XM_017355023 in Exon 7 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
CTTTTTATCGAATTTAAATGGAAGGCGAGTGCTGTCACCTCGCCATTAACACAAGATAAAGGAGATTATTAGCCGCGATCAGGCCAACATCTTATTCCAAAGAAAGAGACAATTTCACGACACTTTCCTCCTTTTAAAAAGTAATGGTATCGGGAATGACTGCACTTTACTTCAGCTTCCGAACTTCTTTTTTTTTTTTCCCCGACACCTATTTTTGCTCGGGGATTAATTTTACCATACAAGAGGCTGCAGAATGGTCTTTCTTGCAGACGTACTTAACTATTCCATTAAAATTCCCATTCAAAGGCAAGGTAATGTCCGAGAATGAATAATTGGCCATGTAAATCACAGAGGAGAGAGAGAGAGGAAAAAAAGGAGACCCTTGTGAGGCTTTTCTCTGTGTATGAAAGTTCTGCTGATGCGAAGGCGCTGTTGAGAAAGGTTATCTTTTACGTTTTTTCTGGCAGTGATATGCGCTGGAACAAAGGGACGATCCTCAA
GGCCTC/- GGTGGAATACATTAAGTGGCTGCAGAAAGAGCAGCAACACGCTCGTGATCTGGAGAGCCGACAGAAGAAACTTGAGCAGGCCAACAGAAGACTCCAGCTACGGATCCAGGTAAAGAGACTGAGAACAAGAGGAAAACTGTCATGAGAGAGAGAGAGAGACATGGCAGACAGCCAGGGTTGGAGGAGTCAAAGACCAAAGGCAAAGAGAGATGTGAAAAAACTGAAGGATTTAATGCTGAACAAAAGAAGAGTTAGGGTCAACGTAGCTTTTAAAAAGTGGAAAATATACTTTAAGGCTACTTATCTTTACTGCTATAACTATCAGATGATGTTCAGTTTGCTAAATTGATAGCAATAAAAGGATCATTTACTCATTATTTACACATACTGAAGTGGTTTCAAACCTTTAGGAGTTTCTTTTTAAATGTTGAGCACTAAAGAGGATATTTTGAAGAAGGATGAAAACGTGTCGCTATTGACTTTCATAGTAGAAATAAAAA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| tfecba6/ba6 | Homozygous | Unknown | 2 figures  from Petratou et al., 2018 | ||
| tfecba6/ba6 | Homozygous | ♀+/- ♂+/- | Fig 3 from Petratou et al., 2021 | 2 figures from Petratou et al., 2021 |
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Supplemental Information
- Genotyping protocol
- None
- Petratou, K., Spencer, S.A., Kelsh, R.N., Lister, J.A. (2021) The MITF paralog tfec is required in neural crest development for fate specification of the iridophore lineage from a multipotent pigment cell progenitor. PLoS One. 16:e0244794
- Petratou, K., Subkhankulova, T., Lister, J.A., Rocco, A., Schwetlick, H., Kelsh, R.N. (2018) A systems biology approach uncovers the core gene regulatory network governing iridophore fate choice from the neural crest. PLoS Genetics. 14:e1007402
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