Genomic Feature
oz22
- ID
- ZDB-ALT-171016-4
- Name
- oz22
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Amacher Lab
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 16: 33104450 - 33104466 (GRCz11) (1) Details
- Nucleotide change
- CTGAGGCGGCAGAATGC/-
- Variant Notes
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 17 bp deleted in Exon 3 (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation (1)
- Flanking Sequence
-
GGACATTAGGAGGAACATCTGTCTACCAAATGATCATCACCATCTTATTAAGATGCAGATCTAAAAATAGCTGTAAAATATATTACGCAGCTGGGGCGTTCAAGGAGAAGGCAAAAGGCCAAAGTGAAGCCTTTATCATGTATTGGCTTAAGAGAGCAGCAGTGAGAGACCTTGTTAGGCCTGAACCTTCAGGAGGCTCTTTAACTGAAAGGTCATCAACTCACGATGATCGCCCATGGGAAGAGACACCCAGTGGCTTGGGGGCTTGGGCAGCACACTTGGGGATGGGGGCTCACTAAACTTGGCTCCGGCATAGTTCTGACCACACTGAGCTGATAAAAGTTTGTTCAGATGGGACTCCCAATTCTGATCGTACGGTGTGGCAAAACGAACAGAGCCATTCTTCTTGTCTACAGACACGGCCTGCCGCGCCTCAGGAGACCAAGAATAGCTGGTGCCCTTCTCACCTCTGCGAAGGTGATGGGGCACCCCTAAGGCTC
CTGAGGCGGCAGAATGC/- ATCACTCCATTCTGGTCTCTACTTCTCTGTTTGCCCCTGCTAACCGGCTGGCTCTTCTTGGGTGCTGGGCGATCTGGAATGTTGTATCTCTCACCACCTCCCATTATATTTTGACTGGATGTCACCTAGCAGAAGACAAAGGTGTAGATTTGTTATATTAAATAAAACATGCATTTATAGTATCTTCAAAACAGGCTTAAAATAAATAAGTGCCCCAGTGATGCAGGCTGACATAAACAAAGGGCTACGTGCAAAACGAGCCCGTCCCCGCCCATCCCCCACTCGCTTCCTCTTCTTACCTCTCTGTTGTAAAAAAGTTGAGTGCGTGGTTCTTTTCACTTTTTAATTTTTCCTCGCCAATTGGGCTCCAGGTCCTCGAAGTAGTTGATCTACTTCTCGCTGCACATGTATGTCCAGCAAGATCTGAGGTTTTCATGTGCCAGTGAGCGTTGTTTTGTCGTGGAACCGAGTTGAACATGAATTCACCTCGGCGCACGGTG - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
pnrc2oz22/oz22 (AB) | Homozygous | ♀+/- ♂+/- | 3 figures ![]() | ||
pnrc2oz22/+; Df(Chr16:fbxl4,coq3,pnrc2,pou3f1,rspo1,gnl2,dnali1,snip1)b644/+ | Complex | Fig. 2 ![]() |
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Supplemental Information
- Genotyping protocol
- None
- Tietz, K.T., Gallagher, T.L., Mannings, M.C., Morrow, Z.T., Derr, N.L., Amacher, S.L. (2020) Pumilio response and AU-rich elements drive rapid decay of Pnrc2-regulated cyclic gene transcripts. Developmental Biology. 462:129-140
- Gallagher, T.L., Tietz, K.T., Morrow, Z.T., McCammon, J.M., Goldrich, M.L., Derr, N.L., Amacher, S.L. (2017) Pnrc2 regulates 3'UTR-mediated decay of segmentation clock-associated transcripts during zebrafish segmentation. Developmental Biology. 429(1):225-239
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