Genomic Feature

hg42

ID
ZDB-ALT-170809-11
Name
hg42
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Sood Lab
Current Source
Zebrafish International Resource Center (ZIRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 9
Variants
Variant Type
Small Deletion
Variant Location
Chr 9: 54980637 - 54980640 (GRCz11) (1) Details
Nucleotide change
GGAA/-
Variant Notes
Deletion 4 bp in exon 1, cDNA: 832delTTCC,
p. F278RfsX43.
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
4 bp deleted in Exon 1 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ATTTATACCCCCACTTAAATTAATTTATATTTGTGAGTATGCATGCATAGTTTCCATTAAATTAATGAATAAATATATGCAATATAATTAATAATACATTTATTAATAATATAATTAAAGGTAACACTTTATTTTGATGGCCCATTCAAGTATTAATAGACTGTCTTCTTAATATCTGTCCAACTTGTACTAACCCTAATCCCAACCTCACAGTCTACTTATAATCAAATGAGAATAGTTGGCATGTACTGTAGATGCAATGCAACTTAAATTCAACAAACAGACCATCAAAATAAGGTGAAACCTTAATAATAAATGTATATAAAAAGAACCTTAAAAGAACAAATATAGTACCAAGTGTGCATACATGATTTCCTAAATAACTAAAGAAGAACCTCACATACAACTTCAGCACACCTATAGCATGAGCAAATCATGTGCTGATGTTAGTTTCTGAGTGAACTAACCCTTAAAAACACTTGAGGAAGCATCACTGACCT
GGAA/- AGTGTCCTTCCACACCGCGCAGACATGCCCCTGAGCGAAGCTCACCGCAATAAGACACTCATTTTTCAGCGTGTGAAGAATCTGAATATCCAGCGGCCGCTCATATGGAAGAACACACACATCCTGAGGAACACAGTCCTCAAAGTAAACCAGCTGTTTCATGCTCGTGGCCGCCAAAACAGCTGATTTTAAATCTCCATGCACATCTTCAGCAGACAAAACCATCATGCATTGCAGCACAGATCTGTATGCGTCAGGAACAAGACGTGCAGCGTCTAATATCTGTGCATCTTCAATTAAATAAAACAGGTCTTGCTCTTTAGGTGCCACTATTTTTCTGGAAAGCTCATGCATGAAATCGACTTTAAAGGGAATTTGCGCTTCCTTCACTCCTCCATCCTTCAAAGATGCATGGTAAACCACATTTTCATGTCTCCATGTAAACATGGGGCCTTGCAGTATTGAAATCCGATCCCTAATATTGTGCACTAACACAAACT
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
fancbhg42/hg42Homozygous♀+/- ♂+/-Fig. 5 from Ramanagoudr-Bhojappa et al., 2018
fancbhg42/+ (AB)HeterozygousUnknown
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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