Genomic Feature

ko355

ID
ZDB-ALT-160217-12
Name
ko355
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with
Lab of Origin
Kawahara Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 3
Variants
Variant Type
Small Deletion
Variant Location
Chr 3: 19366844 - 19366848 (GRCz11) (1) Details
Nucleotide change
CAAAA/-
Variant Notes
A 5-base pair deletion in s1pr5a, that encods for 77 correct amino acids from  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
CGCTGGGTGTTGGACTTGACGATGCGGAATATCCGCACGTAGAGCACCACGATGGACATCAGAACTAGGGTGAAAACAGTGATGCAAAAAAGGATGAAGCTCTTGGCGTAAAGCGGCAGGACAGTGGAGCATTCGTCCAAGTTTCCTATGCAGTTCCAGCCCATGATTGGAAGAATGCCGAGGAGAATTGACAAGAGCCAACTTGCACCGATCAAACCGAACATCCGGCCACGCTTGGCTCCTTGGTACGGCTTCATGCGGACCATCGTGACATGCCGCTCAATAGCTATAGCGAGGAGACTGATGACAGATGCAGCAAGAGTGATAAACACACCACCTTCTCGAAGAAACCACAGCACTGGAGTCATTTTGAGAGTGTTTGCCCCTGAAGTCACGATGTTCACCATGTAGGTGAAACCGGCAAGCAGATCAGACAGCGTCAAGCTGCCGAGTAAGTAGTACATTGGCATGTGGAATTTTTTGTTCTTCCATATTGCCAC
CAAAA/- CAATCGCATTTTCCACTACAATGAGAAGGCAAATGATGAGAAACGCAATGGCCTCGGGTTTCAGTCCATCCCGGTATTTATTCTCTTTTAGCTTCCCGGTGAAGTTGTAATGGGCCATGATAACCGCATTGCTCTGGTACTCCCGAAACATGCTGAACATGTAACCTGGGGATGAGGTCATGGGTGGTGGAGTCGGTTCGATGGCAGCACTGGCAGCGTATGAAGCTTCCATTTCACTTCTGCTGACCTTAAAAGACTCGCTGATGGATCTCTGTTGAACAGGTAGTCCTTATTGCCATATTCCACCAAATCACATAAAGCAATCTCTTAAGGATTTAACAGGGTATTATAGTATCCTTAAGGCGAAATATGCACTCCTTTCCTTGTTGATGCTTAAATCATAGCTTTGCTATATCCTCCAATGCCACCAGAGGGAACTGAAATAAAGCATTCGAAAATAATGTTAATTGATGGGATTACAACAATAATGTTTAATAAAA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
s1pr5ako355/ko355Homozygous♀-/- ♂-/-4 figures from Hisano et al., 2015Fig. 3 from Hisano et al., 2015
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Supplemental Information
Genotyping protocol
None
Citations
TSV
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