Genomic Feature

ct828

ID
ZDB-ALT-151228-2
Name
ct828
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one deletion (1)
Protocol
embryos treated with zinc finger nuclease
Lab of Origin
Prober Lab
Current Source
Other Pages
Notes
No data available
Genome Browser
Variants
Variant Type
Small Deletion
Variant Location
Chr 2: 13382651 - 13382655 (GRCz11) (1) Details
Nucleotide change
TTCTT/-
Variant Notes
5 bp deletion (AAGAA)
ZFIN binding sites: TGCTCCACC and GAAGAATGT
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
5 bp deleted (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
AAGGCACACAATAGAGAGACAGCCCATAACACAAGGATAACACGCTTTGCATGAGCACTCGTCGCAACATGTTTGGTGTGCAGAGGATGAATGATAGCTCTATAACGTTCTGCACTTAAGGCTGTAACATTGAGAACAGAGGCAAAGCAGACTGTCTCAAAGAGACAGGTTTTGAAGTAGCAGCCAGAAATTCCAAACAGAAAAGGATAGTTGCTCCAGAGCTCATAAAGCTCCAGCGGGAGGCCAAGCAACAGCACAAGGAGGTCAGAAATGGCCAGGCTGAACAGGTAGTAGTTTGTCGTTGTGCGCATGATGCGATGACGGGTAATGACAATACAAGTTAGGATGTTGCCCACCACACCTACTACAAAGATGAGCAGGTAGGTGACACATATAGGCAGAAAGAAAGGTGAACGACAGGGTCCAAGGTATTTCTCCAGGTAGGCACTGCGGGATAGACAGAGGTCTGATAGGTTTGCTGTTCTGTTTTGACATTCTTC
TTCTT/- TGGTGGAGCACCATGACGTGTTCACAACAACTGTGAACAGTGAACTTGGAGAGGAGCAGTTGTACTGTATCATTGATTATCAGATGAAAATTACCTATAGGGTTACAAAAAAAGACATACAGGTCAAATGCTTAAACTGTTATGTTCCACAATTTCAACAAAATATCATGTGGCACTTCAAATAATAATGAAATGAAATAACTTGCATTTCAAAAATTTATTTTGATTGATTTTAAAAAATCCTAATATTATTCACTCTTATTTTATTTATTTAGATTTTCAATTATATATTATTTTATAATTATATACTTATATTGATCGTTGATCATGCTAACTAATTAACCAGGTTGACACATGGAACCCTACAAAAATAACTAAACGGGTAAAATTTCACATCGAAAAAAAAAAAAACAATGAATTCAAAAGCAAGGTACTGGAACTTTCTACATATACACTTGCATATTTTTACATTATTTGTCATTTGTAATAATACATATACA
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations