Genomic Feature
ja54
- ID
- ZDB-ALT-151102-5
- Name
- ja54
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one delins (1)
- Protocol
- embryos treated with
- Lab of Origin
- Fukada Lab (Closed)
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Delins
- Variant Location
- Chr 7: 7420081 - 7420087 (GRCz11) (1) Details
- Nucleotide change
- CGAGATT/A
- Variant Notes
-
6 bp deletion. Amino Acid N18 is changed to a stop codon.
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 1 bp inserted / 7 bp deleted (1)
- Transcript Consequence
- None
- Protein Consequence
- Amino Acid Substitution: Asn>Stop at position 18 (1)
- Flanking Sequence
-
GTTAATTTGATTCAACTAAAAAATTTTTTTTACATTGTACATGTAGATATTACTATTTTTAAACAATCCCCAGCCCCAAATGACATGATTTGAATCTTTTTCCGTAAGTTGCACTACTTCAAGTGTAGTTTCAGTACTTTTTGGTCTCACCTTAAAGCAGTGTGTCTTCTGCTCTCCATCCCAGATTGTCCTCGGCAGGGGGAACTTCTTACGGATGCGGTACTTCTCTACCGGGCCGAGTGGTCTGCCCCTCAGGCGCTCCGCCTCCCGGTAATGCGCGTCCAGCCACAGGTCCTGCAGTTTAGCGTGAGATTCGCGGGTAAACCGGTGACTCTGCAGAATCTGATAGAGCGCCTCGAAATTCCCGCCATGGAACGCGACGAGAGCCCGCGCGCGCATCACCGACTCATGACGGTTGAGCAACTCTCCGGCGGAACCGGGCACGGCGGCGGGCAGAGACCAGAGAAACCGGCCCAGGCGCTCGATATCTCCTGTTTCCT
CGAGATT/A CTCGCACACTCGGGCCACCTGCTCAGGTGTGAACATCGGCAGAGGAAACATGGCTGTAGGTTTGTCTGACTAATTTGAAAACTCGCGCGCCCGTTTATACCAACGGCATTCCAGTGTGAGTAACGGACAACCAACGGCCTGAACGACTATATGAATGACTATATAGCTGACCGGTTATATAACGGAGCGACTGGATTCTCGGTAGGACGAATTCTCTGTAGGTCTTCTTAATGTGACATCTTCTAGTAAAGGAGGAGCAGCAGAAGTCAAGCCTATTTATAGAGAGATTCAATTAGCATCTTTGTGCTTGTTTTGAGGGGGATTATGCGCCTCGGTCATTAGCCTCTTAGCAGGGGGTTTGCTGTTCACGGAGGACACCGACTGGATGATCAGATTGTTAGACTCACTAACTGACTGACTGACACAGACTTCATTTCATTGTGCTGGATAAATGGACCTATTATGGAAACGACCCAGTCAGTGAAAACTGCTCTGCGCCT - Additional Sequence
- None
Fish
No data available
Supplemental Information
- Genotyping protocol
- None
- Ogawa, Y., Shiraki, T., Asano, Y., Muto, A., Kawakami, K., Suzuki, Y., Kojima, D., Fukada, Y. (2019) Six6 and Six7 coordinately regulate expression of middle-wavelength opsins in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 116(10):4651-4660
- Ogawa, Y., Shiraki, T., Kojima, D., Fukada, Y. (2015) Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish. Proceedings. Biological sciences. 282(1812):20150659
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