Genomic Feature
ja52
- ID
- ZDB-ALT-151102-4
- Name
- ja52
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one deletion (1)
- Protocol
- embryos treated with
- Lab of Origin
- Fukada Lab (Closed)
- Current Source
- Other Pages
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 7: 7420083 - 7420095 (GRCz11) (1) Details
- Nucleotide change
- AGATTCTCGCACA/-
- Variant Notes
-
13bp deletion in exon1 of six7
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 13 bp deleted in Exon 1 (1)
- Transcript Consequence
- None
- Protein Consequence
- None
- Flanking Sequence
-
TAATTTGATTCAACTAAAAAATTTTTTTTACATTGTACATGTAGATATTACTATTTTTAAACAATCCCCAGCCCCAAATGACATGATTTGAATCTTTTTCCGTAAGTTGCACTACTTCAAGTGTAGTTTCAGTACTTTTTGGTCTCACCTTAAAGCAGTGTGTCTTCTGCTCTCCATCCCAGATTGTCCTCGGCAGGGGGAACTTCTTACGGATGCGGTACTTCTCTACCGGGCCGAGTGGTCTGCCCCTCAGGCGCTCCGCCTCCCGGTAATGCGCGTCCAGCCACAGGTCCTGCAGTTTAGCGTGAGATTCGCGGGTAAACCGGTGACTCTGCAGAATCTGATAGAGCGCCTCGAAATTCCCGCCATGGAACGCGACGAGAGCCCGCGCGCGCATCACCGACTCATGACGGTTGAGCAACTCTCCGGCGGAACCGGGCACGGCGGCGGGCAGAGACCAGAGAAACCGGCCCAGGCGCTCGATATCTCCTGTTTCCTCG
AGATTCTCGCACA/- CTCGGGCCACCTGCTCAGGTGTGAACATCGGCAGAGGAAACATGGCTGTAGGTTTGTCTGACTAATTTGAAAACTCGCGCGCCCGTTTATACCAACGGCATTCCAGTGTGAGTAACGGACAACCAACGGCCTGAACGACTATATGAATGACTATATAGCTGACCGGTTATATAACGGAGCGACTGGATTCTCGGTAGGACGAATTCTCTGTAGGTCTTCTTAATGTGACATCTTCTAGTAAAGGAGGAGCAGCAGAAGTCAAGCCTATTTATAGAGAGATTCAATTAGCATCTTTGTGCTTGTTTTGAGGGGGATTATGCGCCTCGGTCATTAGCCTCTTAGCAGGGGGTTTGCTGTTCACGGAGGACACCGACTGGATGATCAGATTGTTAGACTCACTAACTGACTGACTGACACAGACTTCATTTCATTGTGCTGGATAAATGGACCTATTATGGAAACGACCCAGTCAGTGAAAACTGCTCTGCGCCTCCATATTT - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| six3bja53/ja53; six7ja52/ja52 | Complex | Fig. S1 from Ogawa et al., 2015 |
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Supplemental Information
- Genotyping protocol
- None