Genomic Feature

pd1049

ID
ZDB-ALT-121210-2
Name
pd1049
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Bagnat Lab
Current Source
Other Pages
Notes
Comment Citation
The cftr pd1049 mutation is a TALEN-produced indel producing a frameshift,  ... Navis et al., 2013
Genome Browser
Variants
Variant Type
Delins
Variant Location
Chr 18: 20685227 - 20685233 (GRCz11) (1) Details
Nucleotide change
GGATATC/ATGTATATGTGTATTTTATAC
Variant Notes
The cftr pd1049 mutation is a TALEN-produced indel producing a frameshift,  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
21 bp inserted / 7 bp deleted (1)
Transcript Consequence
Frameshift, Premature Stop (1)
Protein Consequence
Polypeptide Truncation (1)
Sequences
Flanking Sequence
TTCCGGCTCTAATAATATTGAAGCGCAACAGAAAGGGTATTGAATCTTGATCTCCAAAAGTTTTCTAATTTAGGGCAAATCTAGAATGTGTGCATTAAAGTACCCCCAGCTGCCTGGCATCTATTACACAAAGAGCTAACACCAGGTTTATGGATGGAGTGTATTTAAATGAATCATGCAATGTGATTTATTTGCAATAGGCTTGTGTTAGCCAGCAGGCTGTCTGTGCAGATAATAAAATACACTAACCTTATTATAATCAGATTTGCTTGTTTCTGACTTGATTTGACATTATAAAAATAAGCTTCTGCATCTGTATTCTTAAATTTGTTCATTCATAGTAGATCACTTGCAGAACTTTCTGCTCCTTTTGGAGCTTTTATGCCCTATTAGTAAATTTGGGCCTAAATTTCAAATGATTTGCTTTTTAAAAGTGCTTAATGTCTCATACATTTCTTTTGTTTTTTTCCTACAGAGCCTGGGTATGGCCCATTTTATAT
GGATATC/ATGTATATGTGTATTTTATAC ACCACTGCAATGCATCCTGTGTACAGGGCTTATCTGGGAACTCATTGATGTCAATAGCTTCTGTGCACTTGCCGCCATCTCTTTACTGGGTGTTTTGCAGGCCTTCCTTTCACATAAAATGGGTCCTTACAAGTAAGTCTCATATTAGCCTACTGTGCATCCAAATACCAAAAAGTTAATCGTGTCTTACTCTAATAAACTTTGGCAGAGATTTTGCAGAAGTATTTTTATGCTCCCACAGAAACACGCGCATTCCAATTGTGATTCATCCCAAAAGCTTTGAAGAGTTTGGACAGGTAGTTCAGTGCTGCTCCTGTAATCAGGAGGCTGGATAGCCTTGTGCCTTTGAGAAATGTAAACAATGTTGGTCAGAACCGCCACCGAGACAGATTATCACAAGTGTAATTCCGAGTGGGCATTTAGTGTCTGTATTCAGTGTCAGTATAGGCATCATGCTTAGTCAGATGTATTAAACACCCACGTTGGAGTGTTTATGTCAT
Additional Sequence
None
Fish
Supplemental Information
Genotyping protocol
None
Citations