Genomic Feature
sa1022
- ID
- ZDB-ALT-120411-10
- Name
- sa1022
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation
- Protocol
- adult males treated with ENU
- Lab of Origin
- Stemple Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 23: 24959370 (GRCz11) (1) Details
- Nucleotide change
- C/A
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- C>A (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
CAAAAAAATTAAATATCCCAATATATTTTCCAACATCGTGCAGCCCTATTAGTTGCTATAACAAAGACAGCAAAAGCTCTGAGATCAAATTCCCATTTCCACATGCACAGCAAGGTGTTACGAGTCAGCCTAGAAGTCTTATCACAAAAAAACTCCTATAAATCACGAACAGAGAACTGCAGATGTTAGTTGAGATCAGAAAGGCTCCAAAAGTACAATCTAAAGTAATTCTTTTTCACAGTTGTCTGTCTTCATTTTAACCATGGTTGCCAATATAAGTAAATGGTACTGTATTCGAGGTTGTCATCAAACCATTGATGAAATTAAATGAGAACACATTGGCACTGTCAGCCAATTTGTATGTTTTGGTTGGTTTACCAGTAGTTTATGCTAGTTTTGTCTCTGCAGGTCTTGTGTTTTCGTGGGAAGTGCCTGCTCACTTGCCTCTATGGTCATGTAGAAGTGCTGGGCTTCACCATAGAGGAGGGTCAACAGCCTTA
C/A CCTGTGTTTTCACCACCGACCCACTGCCCGCTCACTATCACGGCCTTAGGAAACAACCAGTCCTCCAGCAAGAACAAGAAAGAGGGCCAGCTGGAAGCAAAAGCCATTGTTCGCAAATATTTCACAACAGGTAGCACTTTCACTTATAATCTTAATGACTTTCTTTCTCTCAAATCTGATTTTAAGGCAAAATATTCCAGGTTAAAATTTTACAATTATTTAATAATAATAATGATTTGTTGATTGGGTGTTTTTTTTTTTTTTCAAAATAAAACATGAATTCTGTCTAGAATTTTTTTTCAATTGAAATGGCTTTAGTTTACTTTCATTCTAAAATAAACAGACATAAATTAACAAATAAAATTGATAAAAGAAAATACCAAAATAGAAATGCAAGCACACAAATTGTTTAGTTTACTTTAATTTAAATTTAATTTTACCTAAATCTAAAATAAACATCCCTAAATTAACAAATTAAATTGTTTAATACATTTTTTTAA - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| nol9sa1022/sa1022 | Homozygous | ♀+/- ♂+/- | 6 figures  from Bielczyk-Maczyńska et al., 2015 | 4 figures from Bielczyk-Maczyńska et al., 2015 | |
| nol9sa1022/+ | Heterozygous | ♀+/- ♂+/- | 2 figures from Bielczyk-Maczyńska et al., 2015 | ||
| nol9sa1022/sa1022; jh1Tg | Complex | Fig. 3 from Bielczyk-Maczyńska et al., 2015 | |||
| nol9sa1022/sa1022; jh1Tg; jh2Tg | Complex | Fig. 3 from Bielczyk-Maczyńska et al., 2015 | Fig. 3 from Bielczyk-Maczyńska et al., 2015 | ||
| nol9sa1022/sa1022; la2Tg | Complex | Fig. 5 from Bielczyk-Maczyńska et al., 2015 | |||
| nol9sa1022/sa1022; zf169Tg | Complex | Fig. 5 from Bielczyk-Maczyńska et al., 2015 | |||
| nol9sa1022/sa1022; tp53zdf1/+ | Complex | Fig. 7 from Bielczyk-Maczyńska et al., 2015 | Fig. 7 from Bielczyk-Maczyńska et al., 2015 | ||
| nol9sa1022/sa1022; tp53zdf1/zdf1 | Complex | Fig. 7 from Bielczyk-Maczyńska et al., 2015 | Fig. 7 from Bielczyk-Maczyńska et al., 2015 |
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Supplemental Information
- Genotyping protocol
- None
- White, R.J., Mackay, E., Wilson, S.W., Busch-Nentwich, E.M. (2022) Allele-specific gene expression can underlie altered transcript abundance in zebrafish mutants. eLIFE. 11:
- Bielczyk-Maczyńska, E., Lam Hung, L., Ferreira, L., Fleischmann, T., Weis, F., Fernández-Pevida, A., Harvey, S.A., Wali, N., Warren, A.J., Barroso, I., Stemple, D.L., Cvejic, A. (2015) The Ribosome Biogenesis Protein Nol9 Is Essential for Definitive Hematopoiesis and Pancreas Morphogenesis in Zebrafish. PLoS Genetics. 11:e1005677
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