Genomic Feature
cz280
- ID
- ZDB-ALT-040213-8
- Name
- cz280
- Synonyms
- None
- Affected Genomic Region
- Construct
- None
- Type
- Allele with one point mutation (1)
- Protocol
- adult males treated with ENU
- Lab of Origin
- The Zon Lab
- Current Source
- Zebrafish International Resource Center (ZIRC) ( order this )
- Other Pages
Notes
No data available
Variants
- Variant Type
- Point Mutation
- Variant Location
- Chr 6: 39695273 (GRCz11) (1) Details
- Nucleotide change
- G/T
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- C>A (1)
- Transcript Consequence
- Premature Stop (1)
- Protein Consequence
- Polypeptide Truncation: Cys>Stop at position 598 (1)
- Flanking Sequence
-
ACACTTGTACTAAATATTCACTATATTTAATCATTCACTCACTGCAAAAAAAAAAAATATAAAAAATTATAAAACAATGCTGATGAAGTCATAAGTTGCTTCAGTTTAATTAATGTTAAATATTCTAAAGTTCCTCTAGAAAACACAATTTTAAACATAACCCTTAAACATTTTCCTGAATAAAAAGGCTCTAATATAACTTAAAAATATTAAATATTATTAAAATATATGTTATATGATGAAAATATTCTTACAAGTCAAAAATATTTTTTCTTCCTCAAAATGTATGCAAGTCTCGAGTGGCCATCTCTTATGTACAATCTGATCACGTCTATTTTAAAAATGGTTATTATTTTTTCTCCTAACACCATTTGAAAACAGAAATAATTCACCGTGTTCACCCACCAGTCAGTCTGCTGGCTGAAGTCCTGATAGCACACAACCTGTGCCATCTCACACAGATACGTAGCTCTTCTTAGTGTGTGTGGGGTTTCTTCATG
G/T CAGATTTCCAAGAGGTCGCAGAGTGTGTTGTAGCGTTCCTGTGCTGTGTCTCCAGTCTGCTCCTTATATACACGCAACTCCTCCTCTAACAAACACATCATAACCTCCTCATCCACTAAGGATTCTCCTAACCCGTCCCTCAGAGTCCTGAAAAATGTATTTGTCATCTTAAAAGGCAATTAAGAAGTATAACGGAAGCCTTATTTTAAAGTGCAAGTTACCTCAGGCGTGTGTCATCCTCGCCTGCTCTGGCGGCATCACACTTAGTTTTGACCCACATCGACACAGGTTCAGTGAGATGATCCAAAATCTGTGAGCCCAAAGCCTGAATCCAGCGAACAATCCAGTCCAGAGCCTGCTCCAGATGGCCTGCGCGGCGACTACACTGCACTGTCAGCATGAAACAGCGGTTGACCTGAAACATTCACATGATAAATGTAGTCATAAGGCTTATCTTGTCAAATATACATTTTTTAAAAACTGAATGTACAACTAGATGT - Additional Sequence
- None
Fish
Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
---|---|---|---|---|---|
espl1cz280/cz280 (WIK) | Homozygous | ♀+/- ♂+/- | 6 figures ![]() | ||
espl1cz280/+ (AB) | Heterozygous | Unknown | |||
espl1cz280/+ (WIK) | Heterozygous | ♀+/- ♂+/- | 2 figures from Shepard et al., 2007 |
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Supplemental Information
- Genotyping protocol
- None
- Neumann, J.C., Dovey, J.S., Chandler, G.L., Carbajal, L., and Amatruda, J.F. (2009) Identification of a heritable model of testicular germ cell tumor in the zebrafish. Zebrafish. 6(4):319-327
- Shepard, J.L., Amatruda, J.F., Finkelstein, D., Ziai, J., Finley, K.R., Stern, H.M., Chiang, K., Hersey, C., Barut, B., Freeman, J.L., Lee, C., Glickman, J.N., Kutok, J.L., Aster, J.C., and Zon, L.I. (2007) A mutation in separase causes genome instability and increased susceptibility to epithelial cancer. Genes & Development. 21(1):55-59
- Shepard, J.L., Amatruda, J.F., Stern, H.M., Subramanian, A., Finkelstein, D., Ziai, J., Finley, K.R., Pfaff, K.L., Hersey, C., Zhou, Y., Barut, B., Freedman, M., Lee, C., Spitsbergen, J., Neuberg, D., Weber, G., Golub, T.R., Glickman, J.N., Kutok, J.L., Aster, J.C., and Zon, L.I. (2005) A zebrafish bmyb mutation causes genome instability and increased cancer susceptibility. Proceedings of the National Academy of Sciences of the United States of America. 102(37):13194-13199
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