ZFIN Publication List

ZFIN ID: ZDB-ATB-110114-2

CITATIONS (44 total)

Antibody Name: Ab3-rho

Angueyra, J.M., Kunze, V.P., Patak, L.K., Kim, H., Kindt, K., Li, W. (2023) Transcription factors underlying photoreceptor diversity. eLIFE. 12:

Chen, J., Rattner, A., and Nathans, J. (2005) The rod photoreceptor-specific nuclear receptor Nr2e3 represses transcription of multiple cone-specific genes. The Journal of neuroscience : the official journal of the Society for Neuroscience. 25(1):118-129

Chen, L., Huang, Y., Huang, C., Hu, B., Hu, C., and Zhou, B. (2013) Acute exposure to DE-71 causes alterations in visual behavior in zebrafish larvae. Environmental toxicology and chemistry. 32(6):1370-1375

Chen, X., Sheng, X., Zhuang, W., Sun, X., Liu, G., Shi, X., Huang, G., Mei, Y., Li, Y., Pan, X., Liu, Y., Li, Z., Zhao, Q., Yan, B., Zhao, C. (2017) GUCA1A mutation causes maculopathy in a five-generation family with a wide spectrum of severity. Genetics in medicine : official journal of the American College of Medical Genetics. 19(8):945-954

Choi, S.Y., Baek, J.I., Zuo, X., Kim, S.H., Dunaief, J.L., Lipschutz, J.H. (2015) Cdc42 and sec10 Are Required for Normal Retinal Development in Zebrafish. Investigative ophthalmology & visual science. 56:3361-3370

Deveau, C., Jiao, X., Suzuki, S.C., Krishnakumar, A., Yoshimatsu, T., Hejtmancik, J.F., Nelson, R.F. (2020) Thyroid hormone receptor beta mutations alter photoreceptor development and function in Danio rerio (zebrafish). PLoS Genetics. 16:e1008869

DuVal, M.G., Allison, W.T. (2018) Photoreceptor Progenitors Depend Upon Coordination of gdf6a, thrβ, and tbx2b to Generate Precise Populations of Cone Photoreceptor Subtypes. Investigative ophthalmology & visual science. 59:6089-6101

Ebert, A.M., Childs, S.J., Hehr, C.L., Cechmanek, P.B., McFarlane, S. (2014) Sema6a and Plxna2 mediate spatially regulated repulsion within the developing eye to promote eye vesicle cohesion. Development (Cambridge, England). 141:2473-82

Jin, X., Zhang, Z., Nie, Z., Wang, C., Meng, F., Yi, Q., Chen, M., Sun, J., Zou, J., Jiang, P., Guan, M.X. (2021) An animal model for mitochondrial tyrosyl-tRNA synthetase deficiency reveals links between oxidative phosphorylation and retinal function. The Journal of biological chemistry. 296:100437

Krueger, L.A., Bills, J.D., Lim, Z.Y., Skidmore, J.M., Martin, D.M., Morris, A.C. (2022) Chromatin remodeler Chd7 regulates photoreceptor development and outer segment length. Experimental Eye Research. 226:109299

Li, L., Jiao, X., D'Atri, I., Ono, F., Nelson, R., Chan, C.C., Nakaya, N., Ma, Z., Ma, Y., Cai, X., Zhang, L., Lin, S., Hameed, A., Chioza, B.A., Hardy, H., Arno, G., Hull, S., Khan, M.I., Fasham, J., Harlalka, G.V., Michaelides, M., Moore, A.T., Coban Akdemir, Z.H., Jhangiani, S., Lupski, J.R., Cremers, F.P.M., Qamar, R., Salman, A., Chilton, J., Self, J., Ayyagari, R., Kabir, F., Naeem, M.A., Ali, M., Akram, J., Sieving, P.A., Riazuddin, S., Baple, E.L., Riazuddin, S.A., Crosby, A.H., Hejtmancik, J.F. (2018) Mutation in the intracellular chloride channel CLCC1 associated with autosomal recessive retinitis pigmentosa. PLoS Genetics. 14:e1007504

Li, L., Nakaya, N., Chavali, V.R., Ma, Z., Jiao, X., Sieving, P.A., Riazuddin, S., Tomarev, S.I., Ayyagari, R., Riazuddin, S.A., and Hejtmancik, J.F. (2010) A Mutation in ZNF513, a Putative Regulator of Photoreceptor Development, Causes Autosomal-Recessive Retinitis Pigmentosa. American journal of human genetics. 87(3):400-409

Linder, B., Dill, H., Hirmer, A., Brocher, J., Lee, G.P., Mathavan, S., Bolz, H.J., Winkler, C., Laggerbauer, B., and Fischer, U. (2011) Systemic splicing factor deficiency causes tissue-specific defects: A zebrafish model for Retinitis pigmentosa. Human molecular genetics. 20(2):368-377

Liu, F., Chen, J., Yu, S., Raghupathy, R.K., Liu, X., Qin, Y., Li, C., Huang, M., Liao, S., Wang, J., Zou, J., Shu, X., Tang, Z., Liu, M. (2015) Knockout of RP2 decreases GRK1 and rod transducin subunits and leads to photoreceptor degeneration in zebrafish. Human molecular genetics. 24(16):4648-59

Liu, Y., Cao, S., Yu, M., Hu, H. (2020) TMEM216 Deletion Causes Mislocalization of Cone Opsin and Rhodopsin and Photoreceptor Degeneration in Zebrafish. Investigative ophthalmology & visual science. 61:24

Liu, Y., Rittershaus, J.M., Yu, M., Sager, R., Hu, H. (2022) Deletion of POMT2 in Zebrafish Causes Degeneration of Photoreceptors. International Journal of Molecular Sciences. 23(23):

Liu, Y., Yu, M., Shang, X., Nguyen, M.H.H., Balakrishnan, S., Sager, R., Hu, H. (2020) Eyes shut homolog (EYS) interacts with matriglycan of O-mannosyl glycans whose deficiency results in EYS mislocalization and degeneration of photoreceptors. Scientific Reports. 10:7795

Lobo, G.P., Fulmer, D., Guo, L., Zuo, X., Dang, Y., Kim, S.H., Su, Y., George, K., Obert, E., Fogelgren, B., Nihalani, D., Norris, R.A., Rohrer, B., Lipschutz, J.H. (2017) The exocyst is required for photoreceptor ciliogenesis and retinal development. The Journal of biological chemistry. 292(36):14814-14826

Martins, R.R., Zamzam, M., Tracey-White, D., Moosajee, M., Thummel, R., Henriques, C.M., MacDonald, R.B. (2022) Müller Glia maintain their regenerative potential despite degeneration in the aged zebrafish retina. Aging Cell. 21(4):e13597

Morrow, J.M., Lazic, S., and Chang, B.S. (2011) A novel rhodopsin-like gene expressed in zebrafish retina. Visual neuroscience. 28(4):325-35

Morrow, J.M., Lazic, S., Fox, M.D., Kuo, C., Schott, R.K., Gutierrez, E.A., Santini, F., Tropepe, V., Chang, B.S. (2017) A second visual rhodopsin gene, rh1-2, is expressed in zebrafish photoreceptors and found in other ray-finned fishes. The Journal of experimental biology. 220(Pt 2):294-303

Nelson, R.F., Balraj, A., Suresh, T., Elias, L.J., Yoshimatsu, T., Patterson, S.S. (2022) The developmental progression of eight opsin spectral signals recorded from the zebrafish retinal cone layer is altered by the timing and cell type expression of thyroxin receptor β2 (trβ2) gain-of-function transgenes. eNeuro. 9(6):

Nishiwaki, Y., Masai, I. (2020) β-SNAP activity in the outer segment growth period is critical for preventing BNip1-dependent apoptosis in zebrafish photoreceptors. Scientific Reports. 10:17379

Ogawa, Y., Shiraki, T., Kojima, D., Fukada, Y. (2015) Homeobox transcription factor Six7 governs expression of green opsin genes in zebrafish. Proceedings. Biological sciences. 282(1812):20150659

Ouyang, J., Sun, W., Xiao, X., Li, S., Jia, X., Zhou, L., Wang, P., Zhang, Q. (2019) CPSF1 mutations are associated with early-onset high myopia and involved in retinal ganglion cell axon projection. Human molecular genetics. 28(12):1959-1970

Patil, S.B., Hurd, T.W., Ghosh, A.K., Murga-Zamalloa, C.A., and Khanna, H. (2011) Functional Analysis of Retinitis Pigmentosa 2 (RP2) Protein Reveals Variable Pathogenic Potential of Disease-Associated Missense Variants. PLoS One. 6(6):e21379

Sarkar, H., Toms, M., Moosajee, M. (2021) Involvement of Oxidative and Endoplasmic Reticulum Stress in RDH12-Related Retinopathies. International Journal of Molecular Sciences. 22(16):

Shi, Y., Obert, E., Rahman, B., Rohrer, B., Lobo, G.P. (2017) The Retinol Binding Protein Receptor 2 (Rbpr2) is required for Photoreceptor Outer Segment Morphogenesis and Visual Function in Zebrafish. Scientific Reports. 7:16207

Shu, X., Zeng, Z., Gautier, P., Lennon, A., Gakovic, M., Patton, E., and Wright, A. (2010) Zebrafish Rpgr is required for normal retinal development and plays a role in dynein-based retrograde transport processes. Human molecular genetics. 19(4):657-670

Solanki, A.K., Kondkar, A.A., Fogerty, J., Su, Y., Kim, S.H., Lipschutz, J.H., Nihalani, D., Perkins, B.D., Lobo, G.P. (2020) A Functional Binding Domain in the Rbpr2 Receptor Is Required for Vitamin A Transport, Ocular Retinoid Homeostasis, and Photoreceptor Cell Survival in Zebrafish. Cells. 9(5):

Toulis, V., García-Monclús, S., de la Peña-Ramírez, C., Arenas-Galnares, R., Abril, J.F., Todi, S.V., Khan, N., Garanto, A., Costa, M.D.C., Marfany, G. (2020) The Deubiquitinating Enzyme Ataxin-3 Regulates Ciliogenesis and Phagocytosis in the Retina. Cell Reports. 33:108360

Volkov, L.I., Kim-Han, J.S., Saunders, L.M., Poria, D., Hughes, A.E.O., Kefalov, V.J., Parichy, D.M., Corbo, J.C. (2020) Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision. Proceedings of the National Academy of Sciences of the United States of America. 117(26):15262-15269

Wada, S., Shen, B., Kawano-Yamashita, E., Nagata, T., Hibi, M., Tamotsu, S., Koyanagi, M., Terakita, A. (2018) Color opponency with a single kind of bistable opsin in the zebrafish pineal organ. Proceedings of the National Academy of Sciences of the United States of America. 115(44):11310-11315

Xiao, X., Sun, W., Ouyang, J., Li, S., Jia, X., Tan, Z., Hejtmancik, J.F., Zhang, Q. (2019) Novel truncation mutations in MYRF cause autosomal dominant high hyperopia mapped to 11p12-q13.3. Human genetics. 138(10):1077-1090

Yamashita, T., Ono, K., Ohuchi, H., Yumoto, A., Gotoh, H., Tomonari, S., Sakai, K., Fujita, H., Imamoto, Y., Noji, S., Nakamura, K., and Shichida, Y. (2014) Evolution of Mammalian Opn5 as a Specialized UV-absorbing Pigment by a Single Amino Acid Mutation. The Journal of biological chemistry. 289(7):3991-4000

Yatsuka, H., Hada, K., Shiraishi, H., Umeda, R., Morisaki, I., Urushibata, H., Shimizu, N., Sebastian, W.A., Hikida, T., Ishitani, T., Hanada, R., Shimada, T., Kimoto, K., Kubota, T., Hanada, T. (2020) Exosc2 deficiency leads to developmental disorders by causing a nucleotide pool imbalance in zebrafish. Biochemical and Biophysical Research Communications. 533:1470-1476

Yi, Z., Ouyang, J., Sun, W., Li, S., Xiao, X., Zhang, Q. (2020) Comparative exome sequencing reveals novel candidate genes for retinitis pigmentosa. EBioMedicine. 56:102792

Yi, Z., Ouyang, J., Sun, W., Xiao, X., Li, S., Jia, X., Wang, P., Zhang, Q. (2018) Biallelic mutations in USP45, encoding a deubiquitinating enzyme, are associated with Leber congenital amaurosis. Journal of Medical Genetics. 56(5):325-331

Yin, J., Brocher, J., Linder, B., Hirmer, A., Sundaramurthi, H., Fischer, U., and Winkler, C. (2012) The 1D4 antibody labels outer segments of long double cone but not rod photoreceptors in zebrafish. Investigative ophthalmology & visual science. 53(8):4943-4951

Yu, M., Liu, Y., Li, J., Natale, B.N., Cao, S., Wang, D., Amack, J.D., Hu, H. (2016) Eyes shut homolog is required for maintaining the ciliary pocket and survival of photoreceptors in zebrafish. Biology Open. 5(11):1662-1673

Zhang, J., Wang, C., Shen, Y., Chen, N., Wang, L., Liang, L., Guo, T., Yin, X., Ma, Z., Zhang, B., Yang, L. (2016) A mutation in ADIPOR1 causes nonsyndromic autosomal dominant retinitis pigmentosa. Human genetics. 135(12):1375-1387

Zhu, J., Xu, H., Song, H., Li, X., Wang, N., Zhao, J., Zheng, X., Kim, K.Y., Zhang, H., Mao, Q., Xia, H. (2021) CRISPR/Cas9-mediated grna gene knockout leads to neurodevelopmental defects and motor behavior changes in zebrafish. Journal of neurochemistry. 157(3):520-531

Additional Citations (2):

ZFIN Staff (2002) Scientific Curation. Manually curated data.

ZFIN Staff (2008) Antibody information from supplier. Manually curated data.