Transcript

spata6l-206

ID

ZDB-TSCRIPT-141209-1190

Name

spata6l-206 Nomenclature History

Previous Names

spata6l-003

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

spata6l (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000167046 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000167046.2|gene_biotype:protein_coding|ENSDARG00000004874.6 transcript_biotype:nonsense_mediated_decay gene_symbol:spata6l cdna chromosome:GRCz11:7:69478941:69486924:1
ATGGAAACGCGACGCTTTTCCTGAGCTGTCCATGTTATGG
GTGAACTTGAGAAAATAACAGTTTGTTAGCGGTAACAACG
GGACACAACATGCCTCACAAAGCGGTTAAAGTGATCGTTG
AGCTCCACCTGAGGGCGATTACCTGTCCAGGGGTTCATCT
GCCCGCTAAAGATGATGTTTACCTCAGTATGAAGCAGTGA
AAATTGAACTCATTCAGTTGATTCCTCCAGCTGGAGAAAT
ACTGGCTAGTTTTGAAGAAGATGCTAGAAGTTTTCTTTTC
CCAGAGCCCAAGCTGGTCCCGTCTTTCTCTGGAGTGGAAA
GAGAGGTGTTGATGACTCGACATCCCACTTTCCCTGGTAT
CTCTCCAAGATTAGAGTTCTCCACGAAGACAACAATCAGT
GAAATCTCCAGCGACAATGGCTTCCTAACTCTTCCTGTGA
GGAGAATGAGGAGGAAAACCTCTAGAAAGTCCCGAAAACA
GAGCAGCAGCTCATCCCTTAGACATCTCTCCTCTGCTCCA
TGCAGTCAAAGAAGAAACCACAACACAGACCAGGATCAGA
GATCTTCTGGTTATTCACCCGTCTCTGCCAGAAAGCCCAG
ATTTAGAAGTCTGTCACCACATCGATCAAAACCATTGATA
GATGCAGGAGACCTGAGAAGAAGCTATTCCAGATCTTGGG
TTAGTTGTTTATATCATGTGTCATTCACTATATAACGGGG
GCCAGCTAGTAAGTGCTGTGCAGGTAAACCTCACTCCTGT
GACCTCTAAAGGTGCTCTTGTGACAAATGTTAGAGGCTGT
GGTCTTTAGCCTCCTTGGTAGAGCAACTGACCCTCATGCG
GAAGGTCGCCGGTTCGATACCTGGTCGGATCGGTTTGGCT
GGTGTAGGACCAGCGAGGTTACATCTATACTCAAAAATAC
AAGCATAAATG

OTTDART00000062173 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000062173|OTTDARG00000042993|ZDB-GENE-040426-1369 spata6l|OTTDARP00000048594 spata6l-003 LG_none CU651672.6,CU672220.8 Danio rerio protein_coding KNOWN, 931 bp
ATGGAAACGCGACGCTTTTCCTGAGCTGTCCATGTTATGG
GTGAACTTGAGAAAATAACAGTTTGTTAGCGGTAACAACG
GGACACAACATGCCTCACAAAGCGGTTAAAGTGATCGTTG
AGCTCCACCTGAGGGCGATTACCTGTCCAGGGGTTCATCT
GCCCGCTAAAGATGATGTTTACCTCAGTATGAAGCAGTGA
AAATTGAACTCATTCAGTTGATTCCTCCAGCTGGAGAAAT
ACTGGCTAGTTTTGAAGAAGATGCTAGAAGTTTTCTTTTC
CCAGAGCCCAAGCTGGTCCCGTCTTTCTCTGGAGTGGAAA
GAGAGGTGTTGATGACTCGACATCCCACTTTCCCTGGTAT
CTCTCCAAGATTAGAGTTCTCCACGAAGACAACAATCAGT
GAAATCTCCAGCGACAATGGCTTCCTAACTCTTCCTGTGA
GGAGAATGAGGAGGAAAACCTCTAGAAAGTCCCGAAAACA
GAGCAGCAGCTCATCCCTTAGACATCTCTCCTCTGCTCCA
TGCAGTCAAAGAAGAAACCACAACACAGACCAGGATCAGA
GATCTTCTGGTTATTCACCCGTCTCTGCCAGAAAGCCCAG
ATTTAGAAGTCTGTCACCACATCGATCAAAACCATTGATA
GATGCAGGAGACCTGAGAAGAAGCTATTCCAGATCTTGGG
TTAGTTGTTTATATCATGTGTCATTCACTATATAACGGGG
GCCAGCTAGTAAGTGCTGTGCAGGTAAACCTCACTCCTGT
GACCTCTAAAGGTGCTCTTGTGACAAATGTTAGAGGCTGT
GGTCTTTAGCCTCCTTGGTAGAGCAACTGACCCTCATGCG
GAAGGTCGCCGGTTCGATACCTGGTCGGATCGGTTTGGCT
GGTGTAGGACCAGCGAGGTTACATCTATACTCAAAAATAC
AAGCATAAATG

Related Transcripts

Transcripts related to spata6l

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	spata6l-206	Ensembl	931 nt
aberrant processed transcript	spata6l-208 (1) Ensembl	Ensembl	838 nt	Select Tool ZFIN BLAST
mRNA	spata6l-201 (1) Ensembl	Ensembl	1,347 nt	Select Tool ZFIN BLAST
mRNA	spata6l-203 (1) Ensembl	Ensembl	865 nt	Select Tool ZFIN BLAST
mRNA	spata6l-204 (1) Ensembl	Ensembl	761 nt	Select Tool ZFIN BLAST
ncRNA	spata6l-005 (1) Ensembl	Ensembl	733 nt	Select Tool ZFIN BLAST
ncRNA	spata6l-007 (1) Ensembl	Ensembl	772 nt	Select Tool ZFIN BLAST
ncRNA	spata6l-008 (1) Ensembl	Ensembl	772 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations