Transcript

snx20-204

ID

ZDB-TSCRIPT-131113-2646

Name

snx20-204 Nomenclature History

Previous Names

snx20-003

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

snx20 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000157334 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000157334.2|gene_biotype:protein_coding|ENSDARG00000045554.8 transcript_biotype:nonsense_mediated_decay gene_symbol:snx20 cdna chromosome:GRCz11:25:35958154:35963205:-1
AACATGACCTCTTATAGAGACACAAGTGAACTTACACTTT
CAACTTCAGCAGATTATCCGATGTCTGTGTGCACAGAGAT
CTAATTTTGCCCAACTTCCTGAGGAAGTGCAGCACTTTAC
CTTTCACCGCATGGAACTAATGTAATGTATTTCCTTACAG
AGAGCTAAAATTATCAGATCTTCATGGAGGAAGAGGAAAA
ACCACCCAACATCACTGCTAATCACACGGTTTCATCAGCT
CCTGAGCATTTATCACCCCACCAGGAAACGTTACAGGGTA
ATGGAGAGTAGGATGATCTGTGTTTTGGCGCCTCCTGTCT
GACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAG
CAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCA
GCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGT
GTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGT
GAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCC
ACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACT
TGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAAC
TTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGA
GAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAG
GAAATCCCAAGCGTTTCAATCCT

OTTDART00000056785 (1) [ Show ] (double-click sequence to select)

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>tpe|OTTDART00000056785|OTTDARG00000039574|ZDB-GENE-100806-1 snx20|OTTDARP00000044543 snx20-003 LG_ CU469312.7 Danio rerio protein_coding NOVEL, 703 bp
AACATGACCTCTTATAGAGACACAAGTGAACTTACACTTT
CAACTTCAGCAGATTATCCGATGTCTGTGTGCACAGAGAT
CTAATTTTGCCCAACTTCCTGAGGAAGTGCAGCACTTTAC
CTTTCACCGCATGGAACTAATGTAATGTATTTCCTTACAG
AGAGCTAAAATTATCAGATCTTCATGGAGGAAGAGGAAAA
ACCACCCAACATCACTGCTAATCACACGGTTTCATCAGCT
CCTGAGCATTTATCACCCCACCAGGAAACGTTACAGGGTA
ATGGAGAGTAGGATGATCTGTGTTTTGGCGCCTCCTGTCT
GACCACGGCAGAACTGCAGCAGCACTGGAGAGCCGTCAAG
CAGGAGTTCAGGAGCGTTAAACTGCTGTTCGACATCCCCA
GCGCCAGAATCATCTCACAAACCATCTCCAAACATGTGGT
GTACCAGGTTGTGGTTATTCGCTCGGGTAGTTACGACTGT
GAGCGCGTGGCTATCGAGCGCCGCTATTCAGACTTCCTCC
ACCTCCATCAGGAGCTCCTGTCCGACTTCAGCGAGGAACT
TGAGGACGTTGTGTTTCCCAAAAAGAAGATGACCCGAAAC
TTCTCTGAGGAGATCATCGCTGAGCGTCGCGTAGCTCTGA
GAGACTATCTGACCCAGCTCTACTCCCTCCGCTTTGTCAG
GAAATCCCAAGCGTTTCAATCCT

Related Transcripts

Transcripts related to snx20

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	snx20-204	Ensembl	703 nt
mRNA	snx20-201 (1) Ensembl	Ensembl	846 nt	Select Tool ZFIN BLAST
mRNA	snx20-202 (1) Ensembl	Ensembl	1,213 nt	Select Tool ZFIN BLAST
ncRNA	snx20-002 (1) Ensembl	Ensembl	854 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations