Transcript

ottdart00000052013

ID

ZDB-TSCRIPT-110912-808

Name

ottdart00000052013 Nomenclature History

Previous Names

ch211-140m22.7-006

Transcript Type

ncRNA

Annotation Status

retained intron

Annotation Method

Ensembl

Associated With Genes

si:ch211-140m22.7 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000147148 (1) [ Show ]

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>tpe|ENSDART00000147148.3|gene_biotype:protein_coding|ENSDARG00000077967.6 transcript_biotype:retained_intron cdna chromosome:GRCz11:9:19489998:19491765:1
ATAGGTTTCTGCAGTAAAGATGGCAGCCTCTTTGCTCAGG
GTAGGACGGCTCGGATCTCTGAGGTGTATTCAGACGGAGA
GCTGGAGTTCCTTCAGTAGAGCTCCTCATGCTGCTGCTTT
TAGCTCAAAATCTGGGGACAACAAGAAGTCAAAAAAATCC
AACAAAGGTAAATCTTCCTTATACACATCATATCAGTTTT
AATATAACATCTGCCTTTAATTTGGGGGCAGAAGGTTTTG
TACTTCAGATCTTGATGGAAATTGAGGTTGAAGTAGTTCA
GGGGAATGTGGTCTCTGATCCCAGCTGTTGCTTCTGCTGG
AATGTGTTTTATTTCCTTCTGTCCAATTGTGTCTTGAAGG
TTAAATGACATGCCAGTTAGCATATGAGCACTAAAAGGCA
AAGATGTACTACTGCATATTTTCTTAAGTGTAAAAAAAAA
CAATGACTTTATTATCTAATTTCCTAGCATTGTTTCTGGT
CTGCAAGATTCTCAGCCAATAGGTTATGCTTTTAAACTCG
CATAAAATGAAAGATAAACAACATGGTGATCAGTGTTCAG
TGCATATTTTGCTATTATGGTGAATTCTAAAAATGCATTA
ATGGAAAAGAAATATTCGTTGTGAGTCATTTGTTTATTGT
AGTGGTCAGTTATACGCTTTAGTGGTCACTAATAAAGAAA
TGTGTGAATCTTGAATGCAGTGAATGACCAATTTCAGACA
AGTAATCTGATATTTTAAGCATGTAATGAGGTAATATAAT
AATGATACGTTTGTGCAGAATACAGTGTATTTGAAATAGG
TGAAATTGGAAATATATCTATATATATATATATCCAATCA
GGACTTTTGCAGCCAATACCGAG

OTTDART00000052013 (1) [ Show ]

[Download]

>tpe|OTTDART00000052013|OTTDARG00000036520|ZDB-GENE-070912-73 si:ch211-140m22.7|no_translation CH211-140M22.7-006 LG_ FP017279.6 Danio rerio protein_coding KNOWN, 863 bp
ATAGGTTTCTGCAGTAAAGATGGCAGCCTCTTTGCTCAGG
GTAGGACGGCTCGGATCTCTGAGGTGTATTCAGACGGAGA
GCTGGAGTTCCTTCAGTAGAGCTCCTCATGCTGCTGCTTT
TAGCTCAAAATCTGGGGACAACAAGAAGTCAAAAAAATCC
AACAAAGGTAAATCTTCCTTATACACATCATATCAGTTTT
AATATAACATCTGCCTTTAATTTGGGGGCAGAAGGTTTTG
TACTTCAGATCTTGATGGAAATTGAGGTTGAAGTAGTTCA
GGGGAATGTGGTCTCTGATCCCAGCTGTTGCTTCTGCTGG
AATGTGTTTTATTTCCTTCTGTCCAATTGTGTCTTGAAGG
TTAAATGACATGCCAGTTAGCATATGAGCACTAAAAGGCA
AAGATGTACTACTGCATATTTTCTTAAGTGTAAAAAAAAA
CAATGACTTTATTATCTAATTTCCTAGCATTGTTTCTGGT
CTGCAAGATTCTCAGCCAATAGGTTATGCTTTTAAACTCG
CATAAAATGAAAGATAAACAACATGGTGATCAGTGTTCAG
TGCATATTTTGCTATTATGGTGAATTCTAAAAATGCATTA
ATGGAAAAGAAATATTCGTTGTGAGTCATTTGTTTATTGT
AGTGGTCAGTTATACGCTTTAGTGGTCACTAATAAAGAAA
TGTGTGAATCTTGAATGCAGTGAATGACCAATTTCAGACA
AGTAATCTGATATTTTAAGCATGTAATGAGGTAATATAAT
AATGATACGTTTGTGCAGAATACAGTGTATTTGAAATAGG
TGAAATTGGAAATATATCTATATATATATATATCCAATCA
GGACTTTTGCAGCCAATACCGAG

Related Transcripts

Genome Build: GRCz11Chromosome: 9

Transcripts related to si:ch211-140m22.7

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	si:ch211-140m22.7-201 (1) Ensembl	Ensembl	801 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-140m22.7-203 (1) Ensembl	Ensembl	837 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-140m22.7-206 (1) Ensembl	Ensembl	387 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-140m22.7-207 (1) Ensembl	Ensembl	1,437 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-140m22.7-208 (1) Ensembl	Ensembl	498 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-140m22.7-209 (1) Ensembl	Ensembl	619 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-140m22.7-210 (1) Ensembl	Ensembl	1,821 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000052009 (1) Ensembl	Ensembl	778 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000052013	Ensembl	863 nt
ncRNA	si:ch211-140m22.7-008 (1) Ensembl	Ensembl	247 nt	Select Tool ZFIN BLAST

Segment Relationships

Relationship	Marker Type	Marker	Citations
Contained in	BAC	CH211-32D12	ZFIN Curated Data
Contained in	BAC	CH211-140M22	ZFIN Curated Data

1 - 2 of 2

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Protein Products

No data available

Supporting Sequences

Type	Accession #	Sequence	Length (nt/aa)	Analysis
RNA	GenBank:CO917476 (1)		900 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Citations

Include unpublished citations

No data available