Transcript

itga6b-202

ID

ZDB-TSCRIPT-110325-2029

Name

itga6b-202 Nomenclature History

Previous Names

itga6b-004
dkey-18j14.1-004

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

itga6b (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000148844 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000148844.2|gene_biotype:protein_coding|ENSDARG00000069946.6 transcript_biotype:nonsense_mediated_decay gene_symbol:itga6b cdna chromosome:GRCz11:1:31057240:31063850:1
TCAAGGAGCTTTCAGTGTCAAGAACTAAACGTGAAGTTGG
GGAAACTTCAGCAGCAGAGGGAAAAACCGCCTTTTTTACA
GATAAAAGGAAATACACACTTTTGTCATGTGATGATGGTG
CGGAGTGTATAACTTTCATATGTCCTCTCACGGGAATGGA
CAGCAATGCTGTTATTAGTCTGCGTGCTTACCTTTGGAAT
GCCACTTTCCTGGAGGATTATGCAAAATTGAACTACGTTG
ATATTATTGCCAAAGCATCACTTGATTTCAAGACCACAGC
TACAAATATACAGCTGAAGAATGAGCCATCTCAGGTACGC
GTTACTGTATTTCCAGAACGCAAAGTAGCACAGTACGGCG
GTATGCCCTGGTGGGTTATACTGGTGGCCATTTTACTTGG
ACTCCTCTTGCTGGGCTTACTGGTCTTCCTGCTTTGGAAG
TGTGGTTTTTTCGGCAAAAGTGGCAAAGAACCTGAAAAAG
AGAGACTGACTTCAGATGCATAGAGAAACAGAGAACAAGA
ACCTCTCTCTTAGGGTAAAAAAAACCCAACAACCTCAGAT
CAAGTCTGCCTGCGTGCTCAGAGCTAGCATGAAGAGTTGG
ATTAGCCCATGCTAACCCACTGTAGTCTGAAGCACATGCC
TAGATTGTGGATTTTTCAAACGTTCTAAGTATGATGACAG
CGTGCCCAGTTATAATGCTGTGCGGATAAAGAGAGAAGAG
AGGGACAATCTGTCAGGCAAAGACGAAATGGATTCTTCAG
AGAAGAAACAATGGATGACTTCTTGGAATGAAAATGAGAG
CTACTCATAGCTAAATGCTAACCTATTTGAAAGCAAACCC
AAGACTCCCTTGCTGAGGTTTTAATGCTTACTT

OTTDART00000048275 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000048275|OTTDARG00000029809|ZDB-GENE-050320-5 itga6b|OTTDARP00000037881 DKEY-18J14.1-004 LG_ BX548015.16 Danio rerio protein_coding KNOWN, 873 bp
TCAAGGAGCTTTCAGTGTCAAGAACTAAACGTGAAGTTGG
GGAAACTTCAGCAGCAGAGGGAAAAACCGCCTTTTTTACA
GATAAAAGGAAATACACACTTTTGTCATGTGATGATGGTG
CGGAGTGTATAACTTTCATATGTCCTCTCACGGGAATGGA
CAGCAATGCTGTTATTAGTCTGCGTGCTTACCTTTGGAAT
GCCACTTTCCTGGAGGATTATGCAAAATTGAACTACGTTG
ATATTATTGCCAAAGCATCACTTGATTTCAAGACCACAGC
TACAAATATACAGCTGAAGAATGAGCCATCTCAGGTACGC
GTTACTGTATTTCCAGAACGCAAAGTAGCACAGTACGGCG
GTATGCCCTGGTGGGTTATACTGGTGGCCATTTTACTTGG
ACTCCTCTTGCTGGGCTTACTGGTCTTCCTGCTTTGGAAG
TGTGGTTTTTTCGGCAAAAGTGGCAAAGAACCTGAAAAAG
AGAGACTGACTTCAGATGCATAGAGAAACAGAGAACAAGA
ACCTCTCTCTTAGGGTAAAAAAAACCCAACAACCTCAGAT
CAAGTCTGCCTGCGTGCTCAGAGCTAGCATGAAGAGTTGG
ATTAGCCCATGCTAACCCACTGTAGTCTGAAGCACATGCC
TAGATTGTGGATTTTTCAAACGTTCTAAGTATGATGACAG
CGTGCCCAGTTATAATGCTGTGCGGATAAAGAGAGAAGAG
AGGGACAATCTGTCAGGCAAAGACGAAATGGATTCTTCAG
AGAAGAAACAATGGATGACTTCTTGGAATGAAAATGAGAG
CTACTCATAGCTAAATGCTAACCTATTTGAAAGCAAACCC
AAGACTCCCTTGCTGAGGTTTTAATGCTTACTT

Related Transcripts

Transcripts related to itga6b

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	itga6b-202	Ensembl	873 nt
mRNA	itga6b-201 (1) Ensembl	Ensembl	4,254 nt	Select Tool ZFIN BLAST
mRNA	itga6b-203 (1) Ensembl	Ensembl	921 nt	Select Tool ZFIN BLAST
ncRNA	itga6b-002 (1) Ensembl	Ensembl	551 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations