Transcript

smox-205

ID

ZDB-TSCRIPT-110325-1180

Name

smox-205 Nomenclature History

Previous Names

smox-005

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

smox (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000148388 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000148388.2|gene_biotype:protein_coding|ENSDARG00000036967.8 transcript_biotype:nonsense_mediated_decay gene_symbol:smox cdna chromosome:GRCz11:1:41849241:41859732:1
AAACTGGCTGCTTCTGGTTTCAAGACAGATAAATACAAAG
AGAGACTCTCCGAATAGGCTATACAAAGAACAGAGAGGAT
CGTTCAACGGTTTACGCTGAAGACGATAAAGTCAGATTCC
CTAGAAGAAGAGCTCGGACGGCATGCAAAGTTGTGAAATA
TCTTCAGACAGCACTGATGATCCTCTTAGTAGTGCCTTAC
ACGGACATCGACAACCGCGAATAGTAGTGATTGGTGCGGG
CTTGGCCGGCCTTGCTGCTACCAAAACCCTCTTGGAGAAC
GGCTTCACCAATGTTACGGTGCTAGAAGCCTCAGACCGTA
TTGGAGGCAGAGTGCAAAGCATTCAGCACGGTAAAACCAC
TTTGGAACTTGGAGCAACCTGGATCCATGGGGCAAATGGG
AACCCCGTCTACCACCTGGCTGAGGACAATGGACTGCTGG
AGCACACCACAGAGGAGGAAAGGAGTGTGGGCCGCATCAG
CCTCTACGCCAAAAATGGTGTGGCCCACTACCAGACCAAT
AATGGCAAGCGAATCCCGAAGGATCTGGTGGAAGAGTTCA
GTGACCTGTACAATGAGGTGTATGAGCTGACTCAGGAGTT
CTTCCAGAATGGAAAGCCTGTGGGAGCTGAGAGTCAAAAC
AGTGTGGGGATCTTCACACGAGACGTGGTGCGCAAGAAAA
TCATGCTTGATCCTTATGATTCAGAAAGCATCAGGAAGCT
CAAGTTATCTATGCTACAACAGTACCTCAAGACTCTCCAG
ACATACCTCTCTAGACCTTATTTTGAAATATAAGGTGTGG
TATCATGTTTGACATCTTAACAGGCCCCAACAGGAAGTAG
CAGAGTTACTGTCGTGGAGAGCTGTGAAAGCAGTTCCCCC
AACATGGATGAAGTGTCTCTAAGTGAGTTTGGCGAGTGGA
CTGAGATTCCTGGCGCTCATCATGTCATTCCCACTGGTTT
CATTA

OTTDART00000048495 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000048495|OTTDARG00000019455|ZDB-GENE-031201-3 smox|OTTDARP00000038036 smox-005 LG_ BX004888.10 Danio rerio protein_coding KNOWN, 965 bp
AAACTGGCTGCTTCTGGTTTCAAGACAGATAAATACAAAG
AGAGACTCTCCGAATAGGCTATACAAAGAACAGAGAGGAT
CGTTCAACGGTTTACGCTGAAGACGATAAAGTCAGATTCC
CTAGAAGAAGAGCTCGGACGGCATGCAAAGTTGTGAAATA
TCTTCAGACAGCACTGATGATCCTCTTAGTAGTGCCTTAC
ACGGACATCGACAACCGCGAATAGTAGTGATTGGTGCGGG
CTTGGCCGGCCTTGCTGCTACCAAAACCCTCTTGGAGAAC
GGCTTCACCAATGTTACGGTGCTAGAAGCCTCAGACCGTA
TTGGAGGCAGAGTGCAAAGCATTCAGCACGGTAAAACCAC
TTTGGAACTTGGAGCAACCTGGATCCATGGGGCAAATGGG
AACCCCGTCTACCACCTGGCTGAGGACAATGGACTGCTGG
AGCACACCACAGAGGAGGAAAGGAGTGTGGGCCGCATCAG
CCTCTACGCCAAAAATGGTGTGGCCCACTACCAGACCAAT
AATGGCAAGCGAATCCCGAAGGATCTGGTGGAAGAGTTCA
GTGACCTGTACAATGAGGTGTATGAGCTGACTCAGGAGTT
CTTCCAGAATGGAAAGCCTGTGGGAGCTGAGAGTCAAAAC
AGTGTGGGGATCTTCACACGAGACGTGGTGCGCAAGAAAA
TCATGCTTGATCCTTATGATTCAGAAAGCATCAGGAAGCT
CAAGTTATCTATGCTACAACAGTACCTCAAGACTCTCCAG
ACATACCTCTCTAGACCTTATTTTGAAATATAAGGTGTGG
TATCATGTTTGACATCTTAACAGGCCCCAACAGGAAGTAG
CAGAGTTACTGTCGTGGAGAGCTGTGAAAGCAGTTCCCCC
AACATGGATGAAGTGTCTCTAAGTGAGTTTGGCGAGTGGA
CTGAGATTCCTGGCGCTCATCATGTCATTCCCACTGGTTT
CATTA

Related Transcripts

Transcripts related to smox

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	smox-205	Ensembl	965 nt
mRNA	smox-201 (1) Ensembl	Ensembl	2,220 nt	Select Tool
mRNA	smox-206 (1) Ensembl	Ensembl	568 nt	Select Tool ZFIN BLAST
ncRNA	smox-002 (1) Ensembl	Ensembl	1,902 nt	Select Tool
ncRNA	smox-003 (1) Ensembl	Ensembl	836 nt	Select Tool
ncRNA	smox-004 (1) Ensembl	Ensembl	774 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations