Transcript

caska-003

ID

ZDB-TSCRIPT-090929-9105

Name

caska-003 Nomenclature History

Previous Names

cask-003

Transcript Type

ncRNA

Annotation Status

retained intron

Annotation Method

Ensembl

Associated With Genes

caska (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000138844 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000138844.2|gene_biotype:protein_coding|ENSDARG00000059809.7 transcript_biotype:retained_intron gene_symbol:caska cdna chromosome:GRCz11:9:33381720:33394953:-1
AGCTCAAACTTGTGTTGCAACGTATAAGATTAAGAAGCCT
GCAACTTTATTTACCTCAAGGAATTTGCTTAGCATGGAGA
TGAGATCCTGAGGAAAACCTGATGACTCTGTCTATCTGTA
GGTACTGGAGGAGATTTCATGCTACCCGGAGAATACAGAT
GCTAAAGAACTGAGACGGATCCTAACTCAGCCTCATTTCA
TGGCCTTACTTCAAACTCATGATGTTGTGGCACATGAGGT
GTACAGTGACGATGCAATGAGGGTCACCCCTCCCCCCACA
TCGCCATACCTCAACGGAGACTCACCAGAAAGCACGAACG
GAGACATGGACATCGAAAACGTCACACGAGTGCGTCTTGT
TCAGTTCCAAAAGAACACAGATGAACCAATGGGCATCACA
TTGAAAATGAATGACCTGAACCACTGCATCGTAGCAAGAA
TAATGCATGGAGGAATGATTCACAGACAAGGAACTTTACA
CATTGGAGACGAGATCCGGGAGATCAACGGTATAAGTGTA
GCAAATCAAACAGTGGAGCAGCTTCAGAAAATGCTTCGGG
AGATGAGAGGCAGCATCACCTTTAAGATTGTGCCAAGCTA
CCGCACGCAGCAGTCGTCCTGTGAGAAAGAATCCCCTTCC
ACATCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTA
ACAGTTCTATCTTGGACTTGCCGTCGACCATTCAGCCAAA
AGGACGCCAGATTTATGTACGAGCACAGTTCGAGTATGAC
CCGGTAAAAGATGACCTCA

OTTDART00000026430 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000026430|OTTDARG00000020949|ZDB-GENE-020802-4 caska|no_translation cask-003 LG_none BX545856.10,CR752653.8 Danio rerio protein_coding KNOWN, 779 bp
AGCTCAAACTTGTGTTGCAACGTATAAGATTAAGAAGCCT
GCAACTTTATTTACCTCAAGGAATTTGCTTAGCATGGAGA
TGAGATCCTGAGGAAAACCTGATGACTCTGTCTATCTGTA
GGTACTGGAGGAGATTTCATGCTACCCGGAGAATACAGAT
GCTAAAGAACTGAGACGGATCCTAACTCAGCCTCATTTCA
TGGCCTTACTTCAAACTCATGATGTTGTGGCACATGAGGT
GTACAGTGACGATGCAATGAGGGTCACCCCTCCCCCCACA
TCGCCATACCTCAACGGAGACTCACCAGAAAGCACGAACG
GAGACATGGACATCGAAAACGTCACACGAGTGCGTCTTGT
TCAGTTCCAAAAGAACACAGATGAACCAATGGGCATCACA
TTGAAAATGAATGACCTGAACCACTGCATCGTAGCAAGAA
TAATGCATGGAGGAATGATTCACAGACAAGGAACTTTACA
CATTGGAGACGAGATCCGGGAGATCAACGGTATAAGTGTA
GCAAATCAAACAGTGGAGCAGCTTCAGAAAATGCTTCGGG
AGATGAGAGGCAGCATCACCTTTAAGATTGTGCCAAGCTA
CCGCACGCAGCAGTCGTCCTGTGAGAAAGAATCCCCTTCC
ACATCCAGACAGTCCCCTGCTAATGGCCATTCCAGCATTA
ACAGTTCTATCTTGGACTTGCCGTCGACCATTCAGCCAAA
AGGACGCCAGATTTATGTACGAGCACAGTTCGAGTATGAC
CCGGTAAAAGATGACCTCA

Related Transcripts

Transcripts related to caska

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	caska-201 (1) Ensembl	Ensembl	2,964 nt	Select Tool ZFIN BLAST
mRNA	caska-204 (1) Ensembl	Ensembl	2,903 nt	Select Tool
ncRNA	caska-002 (1) Ensembl	Ensembl	364 nt	Select Tool
ncRNA	caska-003	Ensembl	779 nt
ncRNA	caska-004 (1) Ensembl	Ensembl	504 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations