Transcript

clasp1a-202

ID

ZDB-TSCRIPT-090929-15164

Name

clasp1a-202 Nomenclature History

Previous Names

clasp1a-002
si:dkey-219c10.5-002

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

clasp1a (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000131334 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000131334.2|gene_biotype:protein_coding|ENSDARG00000010280.10 transcript_biotype:nonsense_mediated_decay gene_symbol:clasp1a cdna chromosome:GRCz11:9:38279383:38286788:1
GCCGTCGGCAGGACTGTGGTGAGAACAAGATGGTGCTGCC
CAAGGGCTTTTCTCCCGATCTGGTGGCTGACCTGCTGAAG
GAGCTGTCCAATCACAATGAGCGTGTGGAGGAGAGGAAAG
GAGCGCTGATCGAGCTGTTGAAGATCACCCGCGAGGACAG
TCTGGCTGTGTGGGACGAACACTTCAAAACTATCCTACTG
CTGCTGTTGGAGACACTTGGGGACAAGGATCACACTATTC
GAGCTCTGGCTTTACGGGTGCTAAAAGAGATCCTGAGGAA
CCAACCAGCACGCTTCAAGAACTATGCAGAACTCACTATC
ATGAAAACACTAGAAGCCCATAAGGACTCACATAAAGAGG
AAATCAAGCTGACCAGGTGACTTTTTCTTTGTAACAGCCT
CATTAAGAGTAAAATGAGCTGCCTGGACTATTTAATCTCA
TTTTAAATGCTACACCTGCACTGATAGACACATAGGTTCA
CCTTGGTTAAACAAACCCAACAACAAGATGAATAAATGAA
TAAAGTGCAGGCCTATGAAGAGAAAAAAACATTACCAGTT
CATTTCACCATTGAAGTCAAATGAAGATAATGCTGAAAAG
ATCAGTTCAAAGTCACAGGATCTTAAACTCATATGCACAG
GTGGTGAGGGCGGCTGAAGAAGCTGCTTCTACACTGGCAG
GTTCCATCCACCCAGAGCAGTGCATAAAAGTGTTGTGCCC
CATCGTCCAGACTGCAGACTATCCTATCAACCTTGCTGCT
ATTAAGATGCAGACTAAAGTGGTCGAGCGCATCACCAAGG
AGTCCCTACATCAGCTGCTGCCAGACATCATCCCTGGCCT
CTTACAAGGCTATGATAACACGGAAAGTAGCGTCCGCAAG
GCCAGTGTCTTCTGTC

OTTDART00000034334 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000034334|OTTDARG00000025961|ZDB-GENE-081104-520 clasp1a|OTTDARP00000027699 DKEY-219C10.5-002 LG_none BX548038.9,BX001017.4,BX001051.29 Danio rerio protein_coding NOVEL, 896 bp
GCCGTCGGCAGGACTGTGGTGAGAACAAGATGGTGCTGCC
CAAGGGCTTTTCTCCCGATCTGGTGGCTGACCTGCTGAAG
GAGCTGTCCAATCACAATGAGCGTGTGGAGGAGAGGAAAG
GAGCGCTGATCGAGCTGTTGAAGATCACCCGCGAGGACAG
TCTGGCTGTGTGGGACGAACACTTCAAAACTATCCTACTG
CTGCTGTTGGAGACACTTGGGGACAAGGATCACACTATTC
GAGCTCTGGCTTTACGGGTGCTAAAAGAGATCCTGAGGAA
CCAACCAGCACGCTTCAAGAACTATGCAGAACTCACTATC
ATGAAAACACTAGAAGCCCATAAGGACTCACATAAAGAGG
AAATCAAGCTGACCAGGTGACTTTTTCTTTGTAACAGCCT
CATTAAGAGTAAAATGAGCTGCCTGGACTATTTAATCTCA
TTTTAAATGCTACACCTGCACTGATAGACACATAGGTTCA
CCTTGGTTAAACAAACCCAACAACAAGATGAATAAATGAA
TAAAGTGCAGGCCTATGAAGAGAAAAAAACATTACCAGTT
CATTTCACCATTGAAGTCAAATGAAGATAATGCTGAAAAG
ATCAGTTCAAAGTCACAGGATCTTAAACTCATATGCACAG
GTGGTGAGGGCGGCTGAAGAAGCTGCTTCTACACTGGCAG
GTTCCATCCACCCAGAGCAGTGCATAAAAGTGTTGTGCCC
CATCGTCCAGACTGCAGACTATCCTATCAACCTTGCTGCT
ATTAAGATGCAGACTAAAGTGGTCGAGCGCATCACCAAGG
AGTCCCTACATCAGCTGCTGCCAGACATCATCCCTGGCCT
CTTACAAGGCTATGATAACACGGAAAGTAGCGTCCGCAAG
GCCAGTGTCTTCTGTC

Related Transcripts

Transcripts related to clasp1a

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	clasp1a-202	Ensembl	896 nt
mRNA	clasp1a-201 (1) Ensembl	Ensembl	4,608 nt	Select Tool ZFIN BLAST
mRNA	clasp1a-203 (1) Ensembl	Ensembl	6,762 nt	Select Tool
mRNA	clasp1a-204 (1) Ensembl	Ensembl	190 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations