Transcript

pop4-203

ID

ZDB-TSCRIPT-090929-10920

Name

pop4-203 Nomenclature History

Previous Names

pop4-002

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

pop4 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000167670 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000167670.3|gene_biotype:protein_coding|ENSDARG00000101472.3 transcript_biotype:nonsense_mediated_decay gene_symbol:pop4 cdna chromosome:GRCz11:7:45963785:45971526:1
TGTTTTGGCAGCACGTTTTTTCTACAGCGGGAGTGTTTTA
ATTCCGGTGTCTTCAGCTTTTGAGCTATGGAACGTGTGCT
GCAGTCAGAAATCCCCTCAGATCAAAGTCATCTTTTGGGA
GTTGAGGTGATTCTCAACATGGCACAGATGCAGAGGCTTT
CACAAAAGCATTTGTCAAGAATAGCATTCCCCATATGAAA
GACGCAGCTATCGAGGATATGATGGCACGCAAGGCAGTGG
TCCTGGAATATAAAAGACCAAAGAAAAAGGTGAAGAAGGT
AAAAGCCAAGGGACTGAATGCCAAAGAAAGAAGACGGCTG
CAAATATTCCAGCTTAAGCCTGAACATCAAAAATATGAAC
TCTTCTTACCTCTGCATAAGCTGTGGAAAAGCTATATTGA
GGATCTGTGCAATGGATTGAAACCAGGAAGCAACCCACAG
GTGATCCAGCAGAAGCTCTTGAAAGCTGATTTCCATGGTG
CTATATTAACAGTTGTCAGATCGAAATGCCCTTCGTATGT
GGGTCTAACTGGCATTCTTGTACAGGAACTGAAGCACATC
TTCAAACTCATTACAAAAGAGGACAAACTAAAAGTTATAC
CAAAGAGGAACAGTGTGTTCAGTGTGGAGGTTGGAGGTTT
CGTTTCTCACATCTATGGCAGCAAGTTTGAACTGCGCTCC
AGTGAGCGATCAGCCAAGAAATTCAAAGTCAAAGGGACTA
TTGACTTGTAACGGACCACATTCACATTGTCATCTTTAAC
TAGTGTCTTCTACTGGAGCCCAAGATCCAGTCAGTATTCA
TTAATCATGTCATTTATTTTGTTTTTAATCTAAGGAAAGA
TTTTATTTCCATCGCTTATATCTGTAAAACTAGATTCCTT
TAATGTCCACAAGGGGGAGACATTCACCCCACCCATTTTT
TTTATTTTCTTTTTTGTAGAG

OTTDART00000028427 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000028427|OTTDARG00000042971|ZDB-GENE-050522-505 pop4|OTTDARP00000040018 pop4-002 LG_ CR352229.10 Danio rerio protein_coding KNOWN, 782 bp
GTTTTAATTCCGGTGTCTTCAGCTTTTGAGCTATGGAACG
TGTGCTGCAGTCAGAAATCCCCTCAGATCAAAGTCATCTT
TTGGGAGTTGAGGTGATTCTCAACATGGCACAGATGCAGA
GGCTTTCACAAAAGCATTTGTCAAGAATAGCATTCCCCAT
ATGAAAGACGCAGCTATCGAGGATATGATGGCACGCAAGG
CAGTGGTCCTGGAATATAAAAGACCAAAGAAAAAGGTGAA
GAAGGTAAAAGCCAAGGGACTGAATGCCAAAGAAAGAAGA
CGGCTGCAAATATTCCAGCTTAAGCCTGAACATCAAAAAT
ATGAACTCTTCTTACCTCTGCATAAGCTGTGGAAAAGCTA
TATTGAGGATCTGTGCAATGGATTGAAACCAGGAAGCAAC
CCACAGGTGATCCAGCAGAAGCTCTTGAAAGCTGATTTCC
ATGGTGCTATATTAACAGTTGTCAGATCGAAATGCCCTTC
GTATGTGGGTCTAACTGGCATTCTTGTACAGGAACTGAAG
CACATCTTCAAACTCATTACAAAAGAGGACAAACTAAAAG
TTATACCAAAGAGGAACAGTGTGTTCAGTGTGGAGGTTGG
AGGTTTCGTTTCTCACATCTATGGCAGCAAGTTTGAACTG
CGCTCCAGTGAGCGATCAGCCAAGAAATTCAAAGTCAAAG
GGACTATTGACTTGTAACGGACCACATTCACATTGTCATC
TTTAACTAGTGTCTTCTACTGGAGCCCAAGATCCAGTCAG
TATTCATTAATCATGTCATTTA

Related Transcripts

Transcripts related to pop4

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	pop4-203	Ensembl	941 nt
mRNA	pop4-201 (1) Ensembl	Ensembl	1,069 nt	Select Tool ZFIN BLAST
ncRNA	pop4-003 (1) Ensembl	Ensembl	389 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations