PUBLICATION
Light-Induced Transcription in Zebrafish Targets Mitochondrial Function and Heme Metabolism
- Authors
- Boiti, A., Weber, H.T., Hong, Y., Siauciunaite, R., Gornik, S.G., Foulkes, N.S., Vallone, D.
- ID
- ZDB-PUB-251029-25
- Date
- 2025
- Source
- Antioxidants (Basel, Switzerland) 14: (Journal)
- Registered Authors
- Foulkes, Nicholas-Simon, Vallone, Daniela
- Keywords
- D-box, cavefish, transcriptional regulation, vertebrate evolution, zebrafish
- Datasets
- GEO:GSE290582
- MeSH Terms
- none
- PubMed
- 41154459 Full text @ Antioxidants (Basel)
Citation
Boiti, A., Weber, H.T., Hong, Y., Siauciunaite, R., Gornik, S.G., Foulkes, N.S., Vallone, D. (2025) Light-Induced Transcription in Zebrafish Targets Mitochondrial Function and Heme Metabolism. Antioxidants (Basel, Switzerland). 14:.
Abstract
In fish cells, light exposure elevates levels of reactive oxygen species (ROS) and stress-activated MAP kinase activity and thereby induces gene transcription. However, we lack a complete understanding of the function and evolution of this regulatory mechanism. Here, we reveal that a set of mitochondrial and heme metabolism genes is transcriptionally induced in zebrafish cells upon exposure to light or elevated ROS. The integrity of D-box and E-box enhancers in these gene promoters is essential for their transcriptional activation. Furthermore, light-induced transcription of mitochondrial and heme metabolism genes is absent in a cell line derived from the blind Somalian cavefish (Phreatichthys andruzzii). This fish species has evolved in perpetual darkness and lacks light-dependent circadian and DNA repair responses as well as D-box-mediated and light- and ROS-induced transcription. PAR-bZip transcription factors bind to and activate transcription via the D-box. Cavefish homologs of these factors share extensive homology with their zebrafish counterparts and lack the deletion mutations that characterize other light-dependent genes in this species. These results extend the role of the D-box as a key regulator of light- and ROS-driven transcription in fish, beyond the circadian clock and DNA repair systems, to also encompass metabolic and mitochondrial function.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping