PUBLICATION
Molecular Characterization, Phylogeny, and Expression Profiles of SoxE Subfamily in Scophthalmus maximus
- Authors
- Qing Ji, Honglu Guo, Anxin Shi, Xingqiang Wang, Jiachen Yu, Ziyi Zhang, Jiayang Chen, Xiaowei Shi
- ID
- ZDB-PUB-251015-17
- Date
- 2024
- Source
- Zeitschrift fur angewandte Ichthyologie = Journal of applied ichthyology 7014567: 1-9 (Journal)
- Registered Authors
- Keywords
- none
- MeSH Terms
- none
- PubMed
- none Full text @ Zeitschrift Angew. Ichthyol. (J. Appl. Ichtyol.)
Citation
Qing Ji, Honglu Guo, Anxin Shi, Xingqiang Wang, Jiachen Yu, Ziyi Zhang, Jiayang Chen, Xiaowei Shi (2024) Molecular Characterization, Phylogeny, and Expression Profiles of SoxE Subfamily in Scophthalmus maximus. Zeitschrift fur angewandte Ichthyologie = Journal of applied ichthyology. 7014567:1-9.
Abstract
SOXE transcription factors, including SOX8, SOX9, and SOX10, regulate several developmental events, such as sex determination, chondrogenesis, and neurogenesis. This study systematically identified six SoxE subfamily genes from the turbot (Scophthalmus maximus) genome and transcriptome, including SmSox8a, SmSox8b, SmSox9a, SmSox9b, SmSox10a, and SmSox10b . The duplicates of three SOXE members revealed that SoxE subfamily genes in the turbot underwent significant expansion. Relatively conserved exon-intron structures and intron insertions were detected using genomic structural analysis. Besides, phylogenetic analysis supported the previous classification of the SoxE subfamily. Results of the expression profile revealed that turbot SoxE subfamily genes may be involved in different activities, such as neurogenesis and gonad development. These findings would assist in the understanding of fish SoxE gene subfamily activities and evolution.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping