PUBLICATION
Emergence of time persistence in a data-driven neural network model
- Authors
- Wolf, S., Le Goc, G., Debrégeas, G., Cocco, S., Monasson, R.
- ID
- ZDB-PUB-230315-40
- Date
- 2023
- Source
- eLIFE 12: (Journal)
- Registered Authors
- Keywords
- neuroscience, zebrafish
- MeSH Terms
-
- Animals
- Models, Neurological
- Neural Networks, Computer*
- Neurons/physiology
- Photic Stimulation
- Swimming
- Zebrafish*/physiology
- PubMed
- 36916902 Full text @ Elife
Citation
Wolf, S., Le Goc, G., Debrégeas, G., Cocco, S., Monasson, R. (2023) Emergence of time persistence in a data-driven neural network model. eLIFE. 12:.
Abstract
Establishing accurate as well as interpretable models of network activity is an open challenge in systems neuroscience. Here we infer an energy-based model of the ARTR, a circuit that controls zebrafish swimming statistics, using functional recordings of the spontaneous activity of hundreds of neurons. Although our model is trained to reproduce the low-order statistics of the network activity at short time-scales, its simulated dynamics quantitatively captures the slowly alternating activity of the ARTR. It further reproduces the modulation of this persistent dynamics by the water temperature and visual stimulation. Mathematical analysis of the model unveils a low-dimensional landscape-based representation of the ARTR activity, where the slow network dynamics reflects Arrhenius-like barriers crossings between metastable states. Our work thus shows how data-driven models built from large neural populations recordings can be reduced to low-dimensional functional models in order to reveal the fundamental mechanisms controlling the collective neuronal dynamics.
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping