PUBLICATION
Liquid Chromatography and Tandem Mass Spectrometry in Label-Free Protein Quantification of Zebrafish (Danio rerio) Eggs
- Authors
- Yilmaz, O., Com, E., Lavigne, R., Pineau, C., Bobe, J.
- ID
- ZDB-PUB-210220-42
- Date
- 2021
- Source
- Methods in molecular biology (Clifton, N.J.) 2218: 277-290 (Chapter)
- Registered Authors
- Bobe, Julien
- Keywords
- Eggs, Global proteome, LC-MS/MS, Normalized spectral counts, Protein quantification, Zebrafish
- MeSH Terms
-
- Animals
- Chromatography, Liquid/methods*
- Computational Biology/methods
- Eggs
- Female
- Male
- Proteome/metabolism
- Proteomics/methods
- Tandem Mass Spectrometry/methods*
- Zebrafish/metabolism*
- Zebrafish Proteins/metabolism*
- PubMed
- 33606239 Full text @ Meth. Mol. Biol.
Citation
Yilmaz, O., Com, E., Lavigne, R., Pineau, C., Bobe, J. (2021) Liquid Chromatography and Tandem Mass Spectrometry in Label-Free Protein Quantification of Zebrafish (Danio rerio) Eggs. Methods in molecular biology (Clifton, N.J.). 2218:277-290.
Abstract
Rapid innovations in core proteomic technologies and proteome-based bioinformatics fortified by recent genome sequencing allow the characterization and quantification of proteins on a global scale. These capabilities empower research to develop a more comprehensive understanding of how changes in protein expression and modification can affect complex signaling and regulatory networks. The consequences of these studies have significant implications for understanding how myriad activities are regulated in biological systems.Proteomic approaches have been applied to investigate the physiology, developmental biology, and impact of contaminants in fishes as model organisms. Here, we describe the use of label-free protein quantification and global proteome profiling to characterize eggs of different quality grades in the zebrafish .
Genes / Markers
Expression
Phenotype
Mutations / Transgenics
Human Disease / Model
Sequence Targeting Reagents
Fish
Orthology
Engineered Foreign Genes
Mapping